PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_11123_f_6 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | MYB_related | ||||||||
Protein Properties | Length: 75aa MW: 8617.4 Da PI: 4.259 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 36.2 | 1.4e-11 | 26 | 69 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 ++ ++++E+ l+++ ++ G + W++Ia +++ gRt++++ +w++ Neem_11123_f_6 26 KLEFSEDEETLILRMYNLVGER-WALIAGRIP-GRTAEEIEKYWNT 69 678*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.316 | 21 | 75 | IPR017930 | Myb domain |
SMART | SM00717 | 1.2E-9 | 25 | 73 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-10 | 27 | 69 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.20E-8 | 28 | 69 | No hit | No description |
SuperFamily | SSF46689 | 4.37E-9 | 28 | 70 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.7E-14 | 28 | 69 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 75 aa Download sequence Send to blast |
MADSQHPSTI NNTTADSQEK TSEEPKLEFS EDEETLILRM YNLVGERWAL IAGRIPGRTA 60 EEIEKYWNTR NSTSE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | MYB-type transcription factor involved in epidermal cell fate specification. Acts as a negative regulator of trichome development, by mediating lateral inhibition. Promotes the formation of hair developing cells in H position in root epidermis, probably by inhibiting non-hair cell formation. {ECO:0000269|PubMed:15063185, ECO:0000269|PubMed:15584952}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021887356.1 | 1e-36 | MYB-like transcription factor ETC1 | ||||
Swissprot | Q9LNI5 | 8e-17 | ETC1_ARATH; MYB-like transcription factor ETC1 | ||||
TrEMBL | A0A218WYL8 | 3e-34 | A0A218WYL8_PUNGR; Uncharacterized protein | ||||
TrEMBL | A0A438JG76 | 4e-34 | A0A438JG76_VITVI; Transcription factor CPC | ||||
TrEMBL | E0CVL2 | 4e-34 | E0CVL2_VITVI; Uncharacterized protein | ||||
TrEMBL | U5GK03 | 3e-34 | U5GK03_POPTR; Uncharacterized protein | ||||
STRING | VIT_10s0116g00500.t01 | 6e-35 | (Vitis vinifera) | ||||
STRING | POPTR_0004s02060.1 | 5e-35 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM323 | 28 | 194 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01380.1 | 4e-19 | MYB_related family protein |