PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Carubv10024393m

Common Name

CARUB_v10024393mg

Organism

Capsella rubella

Taxonomic ID

81985

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

MYB_related

Protein Properties

Length: 99aa MW: 11915.5 Da PI: 9.5859

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Carubv10024393m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	25.1	4e-08	33	72	4	45
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +T++E++l+ + +++ G + W++Ia ++ gR +k++ +w Carubv10024393m 33 MTEQEEDLIFRMHRLVGDR-WDLIAGRVV-GRDAKEIERFWI 72 7**************99.*****.*******995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	9.8E-6	29	77	IPR001005	SANT/Myb domain
CDD	cd00167	1.62E-5	32	71	No hit	No description
Pfam	PF00249	1.7E-7	33	72	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.1E-9	34	72	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.3E-6	34	81	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 99 aa Download sequence Send to blast
MDNTNRRSRR KQTIFTLRDS EEVSSIEWEF INMTEQEEDL IFRMHRLVGD RWDLIAGRVV 60 GRDAKEIERF WIMRNSDHFS HKRCRLHKSS RFCISSSP*

Functional Description ? help Back to Top
Source	Description
UniProt	MYB-type transcription factor involved in trichome cell specification. Acts as a negative regulator of trichome patterning and formation. May function by suppressing the expression of GL3. {ECO:0000269\|PubMed:22168948}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Carubv10024393m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006295305.1	3e-66	MYB-like transcription factor TCL2 isoform X1
Swissprot	B3H4X8	4e-46	TCL2_ARATH; MYB-like transcription factor TCL2
TrEMBL	R0HVS8	6e-65	R0HVS8_9BRAS; Uncharacterized protein
STRING	XP_006295305.1	1e-65	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM323	28	194

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30424.1	2e-48	MYB_related family protein

Link Out ? help Back to Top
Phytozome	Carubv10024393m
Entrez Gene	17888572

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Huang M,Hu Y,Liu X,Li Y,Hou X Arabidopsis LEAFY COTYLEDON1 controls cell fate determination during post-embryonic development. Front Plant Sci, 2015. 6: p. 955 [PMID:26579186]