PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676734698 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | MYB_related | ||||||||
Protein Properties | Length: 85aa MW: 10285.8 Da PI: 10.1006 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 33.1 | 1.3e-10 | 28 | 68 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 ++++eE++l+ + k+ G + W++Ia +++ gRt++++ +w+ 676734698 28 KMSEEEEDLISRMYKLVGDR-WELIAGRIP-GRTPEEIERYWL 68 689***************99.*********.***********7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 6.6E-8 | 25 | 73 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.13E-6 | 28 | 69 | No hit | No description |
Pfam | PF00249 | 1.1E-9 | 28 | 69 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS50090 | 6.771 | 30 | 67 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 2.81E-8 | 30 | 68 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.9E-11 | 30 | 68 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0009913 | Biological Process | epidermal cell differentiation | ||||
GO:0010063 | Biological Process | positive regulation of trichoblast fate specification | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 85 aa Download sequence Send to blast |
MDRRRRRQSK AKASCSEEVS SIEWEAVKMS EEEEDLISRM YKLVGDRWEL IAGRIPGRTP 60 EEIERYWLMK HGVVFANKRR EFVRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Determines the fate of epidermal cell differentiation. Represses trichome development by lateral inhibition. Together with GL3 or BHLH2, promotes the formation of hair developing cells (H position) in root epidermis, probably by inhibiting non-hair cell formation. Represses the expression of GL2 and WER in H cells. Positively regulates stomatal formation in the hypocotyl (PubMed:19513241). {ECO:0000269|PubMed:11910008, ECO:0000269|PubMed:12356720, ECO:0000269|PubMed:16291794, ECO:0000269|PubMed:19513241, ECO:0000269|PubMed:9262483}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676734698 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Transcriptional repression correlates with reduced histone acetylation on H3 and H4 mediated by HDA18 in root epidermis N cells (non-hair developing cells). Induced by WER. Negative autoregulation by interfering with the binding of WER to its WER-binding sites (WBS) promoter region, especially in H cells. Down-regulated by GEM. Down-regulated by TMM (PubMed:19513241). {ECO:0000269|PubMed:11910008, ECO:0000269|PubMed:15795220, ECO:0000269|PubMed:16176989, ECO:0000269|PubMed:16207757, ECO:0000269|PubMed:17450124, ECO:0000269|PubMed:19513241}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB004871 | 1e-82 | AB004871.1 Arabidopsis thaliana mRNA for CPC, complete cds. | |||
GenBank | AY074637 | 1e-82 | AY074637.1 Arabidopsis thaliana At2g46410/F11C10.10 mRNA, complete cds. | |||
GenBank | AY519521 | 1e-82 | AY519521.1 Arabidopsis thaliana MYB transcription factor (At2g46410) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013716992.1 | 3e-54 | transcription factor CPC isoform X2 | ||||
Swissprot | O22059 | 8e-54 | CPC_ARATH; Transcription factor CPC | ||||
TrEMBL | A0A0D3BNT7 | 2e-52 | A0A0D3BNT7_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A1J3G497 | 2e-52 | A0A1J3G497_NOCCA; Transcription factor CPC (Fragment) | ||||
TrEMBL | A0A397Z9N2 | 2e-52 | A0A397Z9N2_BRACM; Uncharacterized protein | ||||
TrEMBL | M4CK05 | 2e-52 | M4CK05_BRARP; Uncharacterized protein | ||||
STRING | Bra004539.1-P | 3e-53 | (Brassica rapa) | ||||
STRING | Bo4g009260.1 | 3e-53 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM323 | 28 | 194 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46410.1 | 7e-53 | MYB_related family protein |