PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG016428t1 | ||||||||
Common Name | TCM_016428 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | MYB_related | ||||||||
Protein Properties | Length: 88aa MW: 10462.9 Da PI: 4.8065 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 28.6 | 3.2e-09 | 29 | 68 | 4 | 45 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +T++E++l ++ ++ G + W++Ia +++ gRt++++ +w Thecc1EG016428t1 29 MTEQEEDLVYRIYRLVGDR-WDLIAGRIP-GRTAEEIERFWI 68 7****************99.*********.*********995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 7.2E-6 | 25 | 73 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.0E-8 | 28 | 68 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.41E-5 | 28 | 67 | No hit | No description |
SuperFamily | SSF46689 | 1.33E-7 | 30 | 68 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.9E-10 | 30 | 68 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 6.295 | 30 | 67 | IPR017877 | Myb-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 88 aa Download sequence Send to blast |
MDERPQKQAK ILKSTSEEVS SIEWEFIKMT EQEEDLVYRI YRLVGDRWDL IAGRIPGRTA 60 EEIERFWIMR HGEMFADKRD EEKAKVS* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Involved in epidermal cell fate specification. Negative regulator of trichome development, including endoreplication, by lateral inhibition involving intercellular interactions. Promotes the formation of hair developing cells (trichoblasts) in H position in root epidermis, probably by inhibiting non-hair cell (atrichoblasts) formation. {ECO:0000269|PubMed:10368181, ECO:0000269|PubMed:12356720}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negative autoregulation. Repressed by CPC. {ECO:0000269|PubMed:12356720}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007040481.1 | 4e-57 | PREDICTED: transcription factor TRY isoform X1 | ||||
Swissprot | Q8GV05 | 3e-36 | TRY_ARATH; Transcription factor TRY | ||||
TrEMBL | A0A061G715 | 1e-55 | A0A061G715_THECC; Homeodomain-like superfamily protein | ||||
STRING | EOY24982 | 2e-56 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM323 | 28 | 194 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53200.1 | 1e-38 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG016428t1 |
Entrez Gene | 18606675 |