PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.A01720.1.p | ||||||||
Common Name | EUGRSUZ_A01720, LOC104439768 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | MYB_related | ||||||||
Protein Properties | Length: 76aa MW: 8695.43 Da PI: 4.2291 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 33.4 | 1.1e-10 | 25 | 67 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 ++ ++++E+ l+ + +k+ G + W++Ia +++ gRt++++ +w Eucgr.A01720.1.p 25 KLEFSEDEETLITRMFKLVGER-WSLIAGRIP-GRTAEEIEKFWT 67 678*******************.*********.*********995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.818 | 20 | 70 | IPR017877 | Myb-like domain |
SMART | SM00717 | 3.7E-8 | 24 | 72 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.0E-9 | 26 | 67 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.61E-7 | 27 | 66 | No hit | No description |
SuperFamily | SSF46689 | 9.36E-9 | 27 | 70 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.4E-12 | 27 | 68 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 76 aa Download sequence Send to blast |
MSRLDHSSDD SYADSRAEDV SQDSKLEFSE DEETLITRMF KLVGERWSLI AGRIPGRTAE 60 EIEKFWTSRY STSED* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | MYB-type transcription factor involved in epidermal cell fate specification. Acts as a negative regulator of trichome development, by mediating lateral inhibition. Promotes the formation of hair developing cells in H position in root epidermis, probably by inhibiting non-hair cell formation. {ECO:0000269|PubMed:15063185, ECO:0000269|PubMed:15584952}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.A01720.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010051089.1 | 3e-47 | PREDICTED: MYB-like transcription factor ETC1 isoform X1 | ||||
Swissprot | Q9LNI5 | 3e-17 | ETC1_ARATH; MYB-like transcription factor ETC1 | ||||
TrEMBL | A0A059DGB6 | 6e-46 | A0A059DGB6_EUCGR; Uncharacterized protein | ||||
STRING | XP_010051089.1 | 1e-46 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM323 | 28 | 194 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01380.1 | 1e-19 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.A01720.1.p |
Entrez Gene | 104439768 |