PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Phylogenetic Tree for OGEM667
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Subtree rooted at node 179: /----- GSBRNA2T00102027001 [Brassica napus] (17) /-100+ | \----- XP_009105416.1 [Brassica rapa] (25) /-88-+ | \---------- XP_013590283.1 [Brassica oleracea] (88) /-100+ | \--------------- GSBRNA2T00066295001 [Brassica napus] (20) /-100+ | | /----- Rsa1.0_01947.1_g00008.1 [Raphanus sativus] (18) | \------100-----+ /-100+ \----- RrC763_p8 [Raphanus raphanistrum] (59) | | /-100-+ \------------------------- 676733132 [Sisymbrium irio] (111) | | /-100+ \------------------------------ Tp5g23740 [Thellungiella parvula] (73) | | | \------------------------------------ Thhalv10018547m [Eutrema salsugineum] (131) | | /----- Csa05g085100.1 [Camelina sativa] (51) | /-100+ | | \----- Csa07g034330.1 [Camelina sativa] (150) | /-100+ /-76-+ | \---------- Csa16g028670.1 [Camelina sativa] (160) | | /-78-+ | | | | /----- Cagra.3364s0020.1.p [Capsella grandiflora] (115) | | | \---100---+ | | /-76-+ \----- Carubv10021345m [Capsella rubella] (130) | | | | | | | \-------------------- Bostr.26959s0025.1.p [Boechera stricta] (86) /-100+ \-------76------+ | | | /---------- AT1G68640.1 [Arabidopsis thaliana] (56) | | | | | | \------99------+ /----- Araha.2280s0002.1.p [Arabidopsis halleri] (77) | | \-99-+ /-100+ | \----- 475990 [Arabidopsis lyrata] (130) | | | | | \---------------------------------------------- KFK41287.1 [Arabis alpina] (92) | | /-100+ \--------------------------------------------------- AA797G00002 [Aethionema arabicum] (82) | | | | /----- XP_010532205.1 [Tarenaya hassleriana] (31) | \------------------------100-----------------------+ | \----- XP_010551286.1 [Tarenaya hassleriana] (170) | | /----- orange1.1g018357m [Citrus sinensis] (19) | /-----------100----------+ | | \----- Ciclev10031441m [Citrus clementina] (87) | | --100+ | /----- Gh_D13G0732 [Gossypium hirsutum] (30) | | /-99-+ | | | \----- Gorai.013G081100.1 [Gossypium raimondii] (41) | | /-100+ | | | | /----- Gh_A13G2141 [Gossypium hirsutum] (69) | | | \-90-+ | | | \----- Cotton_A_23249_BGI-A2_v1.0 [Gossypium arboreum] (126) | | /-100+ | | | | /----- Cotton_A_28674_BGI-A2_v1.0 [Gossypium arboreum] (49) \--------------55--------------+ | | /-57-+ | | | | \----- Gh_A12G1545 [Gossypium hirsutum] (67) | | \-100+ | /-100+ | /----- Gh_D12G1679 [Gossypium hirsutum] (54) | | | \-100+ | | | \----- Gorai.008G185000.1 [Gossypium raimondii] (129) |-55-+ | | | \-------------------- Thecc1EG011845t1 [Theobroma cacao] (90) | | | \------------------------- Eucgr.G02341.1.p [Eucalyptus grandis] (48) | \------------------------------ evm.model.supercontig_1.202 [Carica papaya] (52) Root part of tree: /------------------------------------------------------------------ XP_010557921.1 [Tarenaya hassleriana] (1) | |------------------------------------------------------------------ XP_010534328.1 [Tarenaya hassleriana] (110) | | /----- Gh_A11G2749 [Gossypium hirsutum] (2) | /--98-+ | | \----- Cotton_A_14315_BGI-A2_v1.0 [Gossypium arboreum] (44) | /-100+ | | | /----- Gh_D11G3337 [Gossypium hirsutum] (28) | | \--97-+ | | \----- Gorai.007G352600.1 [Gossypium raimondii] (116) | /-100-+ | | | /----------- Gh_D13G0017 [Gossypium hirsutum] (38) | | | | | | | | /----- Gh_A13G0002 [Gossypium hirsutum] (40) | | \-100+--96-+ | /-100+ | \----- Cotton_A_20542_BGI-A2_v1.0 [Gossypium arboreum] (91) | | | | | | | \----------- Gorai.013G001700.1 [Gossypium raimondii] (99) | | | | /--88-+ | /----- Thecc1EG023491t3 [Theobroma cacao] (42) | | | \-------95-------+ | | | \----- Thecc1EG023492t1 [Theobroma cacao] (113) | | | | /-84-+ \--------------------------- evm.model.supercontig_5.165 [Carica papaya] (98) | | | | | | /----------- Neem_24660_f_1 [Azadirachta indica] (15) | | | | | | \---------100---------+ /----- Ciclev10005077m [Citrus clementina] (180) | /-100-+ \-100-+ | | | \----- orange1.1g015258m [Citrus sinensis] (119) | | | | | | /----- Eucgr.A02240.1.p [Eucalyptus grandis] (39) | /-72-+ \---------------100--------------+ | | | \----- EcC049400.20 [Eucalyptus camaldulensis] (80) | | | | | \-------------------------------------------- (179) | | | | /----- orange1.1g045786m [Citrus sinensis] (4) | | /-100-+ | | | \----- Ciclev10001081m [Citrus clementina] (6) | |-----------------100-----------------+ | | | /----- Neem_11963_f_2 [Azadirachta indica] (21) | | \--97-+ | | \----- Neem_25373_f_2 [Azadirachta indica] (34) | | | | /----- Gorai.013G004400.1 [Gossypium raimondii] (7) | | /-100-+ | | | \----- Gh_D13G0042 [Gossypium hirsutum] (22) |-------100------+ | | | /-100+----------- Gh_A13G0027 [Gossypium hirsutum] (32) | | | | | | | \----------- Cotton_A_20511_BGI-A2_v1.0 [Gossypium arboreum] (133) | | | | |---------------100--------------+ /----------- Gh_D10G1937 [Gossypium hirsutum] (45) | | | | | | | |----------- Gorai.011G217200.1 [Gossypium raimondii] (47) | | \-100+ | | | /----- Cotton_A_24486_BGI-A2_v1.0 [Gossypium arboreum] (65) | | \-100-+ | | \----- Gh_A10G1678 [Gossypium hirsutum] (122) | | | |------------------------------------------------- evm.model.supercontig_847.1 [Carica papaya] (63) | | | \------------------------------------------------- Eucgr.G03217.1.p [Eucalyptus grandis] (112) | | /----- 487514 [Arabidopsis lyrata] (3) | /-100-+ | | \----- Araha.13651s0005.1.p [Arabidopsis halleri] (124) | /-96-+ | | \----------- AT5G06960.1 [Arabidopsis thaliana] (33) | /--97-+ | | \---------------- Bostr.13129s0278.1.p [Boechera stricta] (12) | | | /----100---+ /----- Cagra.16209s0003.1.p [Capsella grandiflora] (10) | | | /-100-+ | | | | \----- Carubv10001413m [Capsella rubella] (29) | | \----51----+ | | | /----- Csa20g009310.1 [Camelina sativa] (14) | | \--75-+ | | \----- Csa08g057500.1 [Camelina sativa] (128) + | | | /----- RrC4217_p2 [Raphanus raphanistrum] (24) | | /--63-+ | | | \----- Rsa1.0_00625.1_g00009.1 [Raphanus sativus] (94) | /---------100---------+ | | | | /-100+ /----- XP_013616314.1 [Brassica oleracea] (55) | | | | | | | | | | | |----- GSBRNA2T00119746001 [Brassica napus] (83) | | | | \-100-+ | | | /-100-+ |----- XP_009125669.1 [Brassica rapa] (96) | | | | | | | | | | | \----- GSBRNA2T00078593001 [Brassica napus] (120) | | | /-100+ | | | | | | \---------------- 676732640 [Sisymbrium irio] (78) | | | | | | | \-100-+ \---------------------- Tp6g35910 [Thellungiella parvula] (120) | | | | | \--------------------------- Thhalv10015975m [Eutrema salsugineum] (121) | | | | /----- Csa19g016500.1 [Camelina sativa] (5) | | /-100-+ | | | \----- Csa15g016140.1 [Camelina sativa] (16) | | /-100+ | | | \----------- Csa01g013360.1 [Camelina sativa] (53) | | /---------100---------+ | | | | /----- Cagra.0430s0055.1.p [Capsella grandiflora] (76) | | | \----89----+ | | | \----- Carubv10015943m [Capsella rubella] (190) | | | | | | /----------- GSBRNA2T00096992001 [Brassica napus] (9) | | | | | | | | /----- XP_013611544.1 [Brassica oleracea] (11) | | | /-100+-100-+ | | | | | \----- GSBRNA2T00007398001 [Brassica napus] (68) | | | | | | | | /-------100------+ \----------- XP_009120759.1 [Brassica rapa] (62) | | | | | | | | | \---------------- Rsa1.0_00025.1_g00005.1 [Raphanus sativus] (27) | | | | | | | | /----- GSBRNA2T00074319001 [Brassica napus] (13) | | | | /-100-+ | | | | | \----- XP_013586407.1 [Brassica oleracea] (37) | | | | /-59-+ | | | | | | /----- XP_009146627.1 [Brassica rapa] (43) | /-88-+ | | | \-100-+ | | | | | /--53-+ \----- GSBRNA2T00000204001 [Brassica napus] (110) | | | | | | | | | | | | | \---------------- 676724618 [Sisymbrium irio] (117) | | | | | /-81-+ | | | | | | | /----- Rsa1.0_02505.1_g00009.1 [Raphanus sativus] (89) | | | /--88-+ | | \-------96-------+ | | | | |-54-+ | \----- RrC4565_p6 [Raphanus raphanistrum] (114) | | | | | | | | | | | | | | /----- GSBRNA2T00110643001 [Brassica napus] (61) | | | | | | | /-100-+ | | | | | | | | \----- XP_013628367.1 [Brassica oleracea] (140) | | | | | | | /-100+ | | | | | |--53-+ | | /----- XP_009135220.1 [Brassica rapa] (81) | | | | | | | | \-100-+ | | | | | | |----100---+ \----- GSBRNA2T00111529001 [Brassica napus] (97) | | | | | | | | | | | | | | | | /----- RrC1067_p9 [Raphanus raphanistrum] (72) | | | | | | | \----100---+ | | | | | | | \----- Rsa1.0_00179.1_g00020.1 [Raphanus sativus] (93) | | | /-100+ | | | | | | | | | | \--------------------------- Tp3g10470 [Thellungiella parvula] (118) | | | | | | | | | | | | | \--------------------------------- Thhalv10021187m [Eutrema salsugineum] (57) | | | | | | | | | | | |-------------------------------------- AT3G12250.4 [Arabidopsis thaliana] (35) | | | | | | | | | | | |-------------------------------------- Bostr.3640s0002.1.p [Boechera stricta] (36) | | | | | | | | | | | |-------------------------------------- 478587 [Arabidopsis lyrata] (71) | | | | | | | | | | | \-------------------------------------- Araha.1578s0022.1.p [Arabidopsis halleri] (125) | | | | | | | | | \-------------------------------------------- AA168G00010 [Aethionema arabicum] (85) | | | | | | | | /----------- Csa08g057510.1 [Camelina sativa] (8) \--67-+ | | | | | | | /----- Carubv10001409m [Capsella rubella] (26) | | | |-100-+ | \-100-+ /-85-+ \----- Cagra.16209s0004.1.p [Capsella grandiflora] (100) | | | | | | | |----------- Csa20g009280.1 [Camelina sativa] (50) | | /--99-+ | | | | | \----------- Csa13g008990.1 [Camelina sativa] (127) | | | | | | | \---------------- Bostr.13129s0279.1.p [Boechera stricta] (23) | | /---------100---------+ | | | | /----- Araha.13651s0004.1.p [Arabidopsis halleri] (70) | | | | /-100-+ | | | | | \----- 487510 [Arabidopsis lyrata] (79) | | | \----100---+ | | | \----------- AT5G06950.1 [Arabidopsis thaliana] (75) | | | | | | /----- XP_009122312.1 [Brassica rapa] (46) | | | /-100-+ | | | | \----- GSBRNA2T00136153001 [Brassica napus] (132) | | | /-100+ | \-100+ | | /----- XP_013606547.1 [Brassica oleracea] (58) | | | \-100-+ | | /--67-+ \----- GSBRNA2T00107087001 [Brassica napus] (84) | | | | | | /-100+ \---------------- RrC951_p3 [Raphanus raphanistrum] (95) | | | | | | /-100-+ \---------------------- Rsa1.0_00816.1_g00006.1 [Raphanus sativus] (60) | | | | | | /-98-+ \--------------------------- 676732454 [Sisymbrium irio] (74) | | | | | \--82-+ \--------------------------------- Tp6g35920 [Thellungiella parvula] (64) | | | \-------------------------------------- Thhalv10014082m [Eutrema salsugineum] (123) | \------------------------------------------------------------ XP_010520066.1 [Tarenaya hassleriana] (66) |