PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_5.165
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family bZIP
Protein Properties Length: 467aa    MW: 51580.9 Da    PI: 7.8215
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_5.165genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_131.15.1e-10179221345
                                  XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                       bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 
                                  + k  rr+++NReAAr+sR+RKka++++Le    +L++  ++L
  evm.model.supercontig_5.165 179 DQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQEL 221
                                  56889*************************9777777666555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003384.7E-9177240IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.415179223IPR004827Basic-leucine zipper domain
PfamPF001704.0E-7180221IPR004827Basic-leucine zipper domain
CDDcd147082.12E-21181233No hitNo description
SuperFamilySSF579597.74E-7181224No hitNo description
Gene3DG3DSA:1.20.5.1701.6E-7182225No hitNo description
PROSITE patternPS000360184199IPR004827Basic-leucine zipper domain
PfamPF141443.3E-30264338IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009410Biological Processresponse to xenobiotic stimulus
GO:0009627Biological Processsystemic acquired resistance
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MGSRTVNIGA KNDKAVTGMP SYIPSLPTSN QIGSEGNTIH TSRITEFGTF EQSLGYRIED  60
AIDLSRNSIF NQLKPSGQAV GADIQFNALN KALATTETNL PAAIVVSQTL LHKEPQPNLV  120
SVSVGHRENW AETSMADASP RTDTSTDDTD DKNQRLEREQ PAALMASDSS DRSKDKTADQ  180
KTLRRLAQNR EAARKSRLRK KAYVQQLESS RLKLTQLEQE LQRARQQGIF ISSSGDQSHS  240
MSGNGALAFD VEYARWLEEH NRLINELRAA VNSHAGDTEL RTIVDNVTAQ FDDIFRLKGI  300
AAKADVFHIL SGMWKTPAER CFMWIGGFRS SELLKLLLNQ LEPLTEQQLV SIYNLQQSSQ  360
QAEDALSQGM EALQQSLAET LANGSPGPSG SSGNVANYMG QMAMAMGKLG TLEGFLRQAD  420
NLRQQTLQQM HRILTTRQSA RALLAINDYF SRLRALSSLW LARPRE*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00349DAPTransfer from AT3G12250Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_5.165
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021908631.10.0transcription factor TGA2.3-like
SwissprotO241600.0TGA21_TOBAC; TGACG-sequence-specific DNA-binding protein TGA-2.1
TrEMBLA0A061EV200.0A0A061EV20_THECC; TGACG motif-binding factor 6 isoform 1
STRINGevm.model.supercontig_5.1650.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66728133
Representative plantOGRP7221667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12250.51e-126TGACG motif-binding factor 6