PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa08g057510.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bZIP
Protein Properties Length: 331aa    MW: 36626.1 Da    PI: 9.0124
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa08g057510.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_130.76.6e-104586445
                    XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1  4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45
                     k  rr+++NReAAr+sR+RKka++++Le+   +L++  ++L
  Csa08g057510.1 45 QKTLRRLAQNREAARKSRLRKKAYVQQLENSRLKLTQLEQEL 86
                    5888*************************9877777766555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1706.1E-83989No hitNo description
SMARTSM003384.9E-842105IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.4384488IPR004827Basic-leucine zipper domain
PfamPF001706.4E-74686IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.56E-74689No hitNo description
PROSITE patternPS0003604964IPR004827Basic-leucine zipper domain
PfamPF141448.0E-35128203IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009410Biological Processresponse to xenobiotic stimulus
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MADTSPRTDV STDDDTDHPD LGSEGALANT AASDSSDRSK GKMDQKTLRR LAQNREAARK  60
SRLRKKAYVQ QLENSRLKLT QLEQELQRAR QQGVFISSTG DQAHSTGGNG ALAFDAEHSR  120
WLEEKNKQMN ELRSALNAHA GDAELRTIVD GVMAHYEELF RIKSNAAKND VFHLLSGMWK  180
TPAERCFLWL GGFRSSELLK LLANQLEPMT ERQLVGINNL QQTSQQAEDA LSQGMESLQQ  240
SLADTLSSGT LGSSSSGNVA SYMGQMAMAM GKLGTLEGFI RQADNLRLQT LQQMIRVLTT  300
RQSARALLAI HDYFSRLRAL SSLWLARPRE *
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Required to induce the systemic acquired resistance (SAR) via the regulation of pathogenesis-related genes expression. Binding to the as-1 element of PR-1 promoter is salicylic acid-inducible and mediated by NPR1. Could also bind to the C-boxes (5'-ATGACGTCAT-3') with high affinity. {ECO:0000269|PubMed:12897257}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00492DAPTransfer from AT5G06950Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa08g057510.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1176860.0AK117686.1 Arabidopsis thaliana At5g06950 mRNA for putative bZip transcription factor AtbZip20/tga2, complete cds, clone: RAFL17-34-M19.
GenBankATHAHBP1B0.0D10042.1 Arabidopsis thaliana mRNA for AHBP-1b, complete cds.
GenBankBT0061340.0BT006134.1 Arabidopsis thaliana clone U50303 putative bZIP transcription factor, HBP-1b homolog (At5g06950) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010423270.10.0PREDICTED: transcription factor TGA2
RefseqXP_010423271.10.0PREDICTED: transcription factor TGA2
RefseqXP_010452643.10.0PREDICTED: transcription factor TGA2
RefseqXP_010452644.10.0PREDICTED: transcription factor TGA2
RefseqXP_010491277.10.0PREDICTED: transcription factor TGA2
RefseqXP_010491278.10.0PREDICTED: transcription factor TGA2
RefseqXP_010491279.10.0PREDICTED: transcription factor TGA2
RefseqXP_010491280.10.0PREDICTED: transcription factor TGA2
RefseqXP_010491282.10.0PREDICTED: transcription factor TGA2
RefseqXP_010491283.10.0PREDICTED: transcription factor TGA2
SwissprotP432730.0TGA2_ARATH; Transcription factor TGA2
TrEMBLB2BDS40.0B2BDS4_ARATH; BZIP transcription factor TGA2
STRINGXP_010423270.10.0(Camelina sativa)
STRINGXP_010452643.10.0(Camelina sativa)
STRINGXP_010491277.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66728133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06950.40.0bZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Zander M,Thurow C,Gatz C
    TGA Transcription Factors Activate the Salicylic Acid-Suppressible Branch of the Ethylene-Induced Defense Program by Regulating ORA59 Expression.
    Plant Physiol., 2014. 165(4): p. 1671-1683
    [PMID:24989234]
  3. Herrera-Vásquez A, et al.
    Transcriptional Control of Glutaredoxin GRXC9 Expression by a Salicylic Acid-Dependent and NPR1-Independent Pathway in Arabidopsis.
    Plant Mol. Biol. Rep., 2018.
    [PMID:26696694]
  4. Huang LJ, et al.
    Ectopically expressed glutaredoxin ROXY19 negatively regulates the detoxification pathway in Arabidopsis thaliana.
    BMC Plant Biol., 2016. 16(1): p. 200
    [PMID:27624344]
  5. Uhrig JF, et al.
    CC-type glutaredoxins recruit the transcriptional co-repressor TOPLESS to TGA-dependent target promoters in Arabidopsis thaliana.
    Biochim Biophys Acta Gene Regul Mech, 2017. 1860(2): p. 218-226
    [PMID:27838237]
  6. Sun T, et al.
    TGACG-BINDING FACTOR 1 (TGA1) and TGA4 regulate salicylic acid and pipecolic acid biosynthesis by modulating the expression of SYSTEMIC ACQUIRED RESISTANCE DEFICIENT 1 (SARD1) and CALMODULIN-BINDING PROTEIN 60g (CBP60g).
    New Phytol., 2018. 217(1): p. 344-354
    [PMID:28898429]