PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10001081m
Common NameCICLE_v100010812mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bZIP
Protein Properties Length: 463aa    MW: 51078 Da    PI: 8.4738
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10001081mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_129.91.3e-09169209545
                      CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 
                      k  rr+++NReAAr+sR+RKka++++Le    +L++  ++L
  Ciclev10001081m 169 KTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQEL 209
                      7889************************9777777666555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.2E-7165228IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.415167211IPR004827Basic-leucine zipper domain
PfamPF001709.7E-7169209IPR004827Basic-leucine zipper domain
CDDcd147083.95E-22169221No hitNo description
SuperFamilySSF579597.74E-7169212No hitNo description
Gene3DG3DSA:1.20.5.1701.6E-7170213No hitNo description
PROSITE patternPS000360172187IPR004827Basic-leucine zipper domain
PfamPF141441.4E-33251326IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009410Biological Processresponse to xenobiotic stimulus
GO:0009627Biological Processsystemic acquired resistance
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MPSFDSQFSN SEKLVTFSCT EGTTIQSNRG SNLGAFEQSV GFRLGDAVNL TGNTVLNSTK  60
ASGQANTSDP LQIVTFDKSP TASNFNLSTI QVESHRLPFE KNHRSNLVSI SSGNTENWGE  120
SNMADASPRT DISTDADTDE KNQRFDRGQS TAVVASDSSD RSKDKLDQKT LRRLAQNREA  180
ARKSRLRKKA YVQQLESSRL KLTQLEQELQ RARQQGIFIS SSGDQTHSMS GNGAMAFDVE  240
YARWLEEQNK QINELRSAVN SHASDTELRM VVDGIMAHYD EIFRLKANAA KADVFHLLSG  300
MWKTPAERCF MWLGGFRSSE LLKLLVNQLE PLTEQQLVGI GNLQQSSQQA EDALSQGMEA  360
LQQSLAETLS SGSLGSSGSG NVANYMGQMA MAMGKLGTLE GFIRQADNLR QQTLQQMHRI  420
LTTRQSARAL LAIHDYFSRL RAPSSLGRAP PREGRCIVFF AR*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ccl.116140.0fruit
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00349DAPTransfer from AT3G12250Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006432430.10.0transcription factor TGA6 isoform X1
RefseqXP_024039910.10.0transcription factor TGA6 isoform X1
SwissprotQ415580.0HBP1C_WHEAT; Transcription factor HBP-1b(c1) (Fragment)
TrEMBLV4T2U10.0V4T2U1_9ROSI; Uncharacterized protein
STRINGXP_006432430.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66728133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12250.21e-167TGACG motif-binding factor 6