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Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
RrC4565_p6 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
| Family |
bZIP |
| Protein Properties |
Length: 310aa MW: 34473.1 Da PI: 8.4793 |
| Description |
bZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| RrC4565_p6 | genome | MSU | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | bZIP_1 | 30.7 | 6.7e-10 | 64 | 104 | 5 | 45 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45
k rr+++NReAAr+sR+RKka++++Le+ +L++ ++L
RrC4565_p6 64 KTLRRLAQNREAARKSRLRKKAYVQQLENSRLKLTQLEQEL 104
7889************************9877777766555 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 310 aa
Download sequence Send
to blast |
MPQLMATQIL EIWGLEPGSL GRAKSTGLNF FLVLIFMQSE RGQMMLAGGA SDSSDRSKDK 60
LDQKTLRRLA QNREAARKSR LRKKAYVQQL ENSRLKLTQL EQELQRARQQ GVFISSSGDQ 120
AHSTGGNGAL AFDAEHSRWL EEKNRQMNEL RSALNAHAGD AELRIIVEGV MAHYEELFRI 180
KSNAAKNDVF HLLSGMWKTP AERCFLWLGG FRSSELLKVT FLQQLLANQL EPMTERQVLG 240
INSLQQTSQQ AEDALSQGME SLQQSLAETL SSGTLGSSSS DNVASYMGQM AMAMGQLGTL 300
EGFIRQGISW
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters (By similarity). {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AB493610 | 0.0 | AB493610.1 Arabidopsis thaliana At3g12250 mRNA for hypothetical protein, partial cds, clone: RAAt3g12250. |
| GenBank | AJ320540 | 0.0 | AJ320540.1 Arabidopsis thaliana mRNA for transcription factor TGA6 (AtbZIP45 gene). |
| GenBank | AK175452 | 0.0 | AK175452.1 Arabidopsis thaliana mRNA for bZip transcription factor TGA6 / AtbZip45, complete cds, clone: RAFL21-87-N17. |
| GenBank | AK176850 | 0.0 | AK176850.1 Arabidopsis thaliana mRNA for bZip transcription factor TGA6 / AtbZip45, complete cds, clone: RAFL25-40-P05. |
| GenBank | BT029515 | 0.0 | BT029515.1 Arabidopsis thaliana At3g12250 mRNA, complete cds. |
