PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_24486_BGI-A2_v1.0
Common NameF383_27590
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bZIP
Protein Properties Length: 474aa    MW: 52636.9 Da    PI: 6.1996
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_24486_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_130.48.2e-10189229545
                                 CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                      bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 
                                 k  rr+++NReAAr+sR+RKka++++Le    +L++  ++L
  Cotton_A_24486_BGI-A2_v1.0 189 KTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQEL 229
                                 7889************************9777777666555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003386.5E-8185248IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.415187231IPR004827Basic-leucine zipper domain
PfamPF001708.0E-7189229IPR004827Basic-leucine zipper domain
CDDcd147087.93E-24189241No hitNo description
SuperFamilySSF579597.5E-7189232No hitNo description
Gene3DG3DSA:1.20.5.1701.6E-7190233No hitNo description
PROSITE patternPS000360192207IPR004827Basic-leucine zipper domain
PfamPF141444.8E-34271346IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009410Biological Processresponse to xenobiotic stimulus
GO:0009627Biological Processsystemic acquired resistance
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 474 aa     Download sequence    Send to blast
MPGFDSQLPV TNILCSERST IHPFPVSNFG TFDQSVGFRL EVAVNLSGTR FTFINVPYIF  60
FMEFDMTCGN ADGAVFDSAK VSRQEVPSDC DLIGTSDKTP TSFTNYPSTN QVESPRLQLE  120
KGQETNLVSI PSGNTENWGE SNMADGSPKT DISTDADTDE KSQRFDRGKS SIVAVSDSSD  180
RSKSNLDQKT LRRLAQNREA ARKSRLRKKA YVQQLESSRL KLTQLEQELQ RARQQGIFIS  240
SSGDQSHSMG GNGAMAFDVE YARWLEEQNR QINELRTAVN SHASDAELRI IVDGVMAHYD  300
EIFRLKSNAA KADVFHLLSG MWKTPAERCF LWLGGFRSSE LLKLLVNQLE PLTEQQLVGI  360
GNLQQSSQQA EDALSQGMEA LQQSLAETLS TGSLGSSGSS GNVANYMGQM AMAMGKLGTL  420
EGFIRQADNL RQQTLQQMHR ILTTRQSARA LLAIHDYFSR LRALSSLWLA RPRE
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00349DAPTransfer from AT3G12250Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016677007.10.0PREDICTED: transcription factor TGA2-like isoform X1
RefseqXP_016677008.10.0PREDICTED: transcription factor TGA2-like isoform X1
RefseqXP_016677009.10.0PREDICTED: transcription factor TGA2-like isoform X1
RefseqXP_016677010.10.0PREDICTED: transcription factor TGA2-like isoform X1
RefseqXP_017649120.10.0PREDICTED: transcription factor TGA2-like isoform X1
RefseqXP_017649121.10.0PREDICTED: transcription factor TGA2-like isoform X1
RefseqXP_017649122.10.0PREDICTED: transcription factor TGA2-like isoform X1
RefseqXP_017649123.10.0PREDICTED: transcription factor TGA2-like isoform X1
RefseqXP_017649124.10.0PREDICTED: transcription factor TGA2-like isoform X1
SwissprotQ6IVC20.0TGAL1_ORYSJ; Transcription factor TGAL1
TrEMBLA0A0B0PAK60.0A0A0B0PAK6_GOSAR; Uncharacterized protein
TrEMBLA0A1U8IFY60.0A0A1U8IFY6_GOSHI; transcription factor TGA2-like isoform X1
STRINGGorai.011G217200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66728133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12250.21e-169TGACG motif-binding factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chern M, et al.
    Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins.
    BMC Genomics, 2014. 15: p. 461
    [PMID:24919709]