PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00136153001
Common NameGSBRNA2T00136153001, LOC106419049
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bZIP
Protein Properties Length: 328aa    MW: 36377.1 Da    PI: 9.3135
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00136153001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_130.76.8e-104383545
                         CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1  5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45
                         k  rr+++NReAAr+sR+RKka++++Le+   +L++  ++L
  GSBRNA2T00136153001 43 KTVRRLAQNREAARKSRLRKKAYVQQLENSRLKLTQLEQEL 83
                         7789************************9877777766555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003385.7E-739102IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.4384185IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1703.8E-84388No hitNo description
SuperFamilySSF579593.66E-74386No hitNo description
PfamPF001706.4E-74383IPR004827Basic-leucine zipper domain
PROSITE patternPS0003604661IPR004827Basic-leucine zipper domain
PfamPF141441.3E-31126200IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009410Biological Processresponse to xenobiotic stimulus
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MADMSPLTDV STDGDRDLGS EGALVNTAAS DSSERSKNKL DQKTVRRLAQ NREAARKSRL  60
RKKAYVQQLE NSRLKLTQLE QELQRARQQG VFISSSGDQA HSTGGNGALA FDAEYSRWLE  120
EKNKRMNEMR SALNAHAGDG ELLIIVDGVM AHYEELFRIK SNAAKNDVFH LLYGMWKTPA  180
ERCFLWLGGF RSSEILKLLV NQLEPMTERQ VMGINSLQET SQQAEDALSQ GMESLQQSLA  240
DTLSSGTLGS SSSGNVASYM GQMAMAMGKL GTLEGFIRQA DNLRLQTLQQ MIRVLTTRQS  300
ARALLAIHDY SSRLRALSSL WLARPRE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.204800.0seed
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed primarily in roots of young seedlings and later expressed in aging cotyledons, mesophyll cells of hydathodes on leaf margins, vascular tissue and trichomes of senescing rosette leaves. Also detected in young lateral roots and in mature pollen grains.
UniprotTISSUE SPECIFICITY: Expressed predominantly in roots and flowers.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00492DAPTransfer from AT5G06950Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00136153001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3531250.0AK353125.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-10-O14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013715251.10.0transcription factor TGA2
RefseqXP_013715252.10.0transcription factor TGA2
RefseqXP_013715253.10.0transcription factor TGA2
RefseqXP_013715255.10.0transcription factor TGA2
RefseqXP_022549426.10.0transcription factor TGA2
RefseqXP_022549427.10.0transcription factor TGA2
SwissprotQ391400.0TGA6_ARATH; Transcription factor TGA6
TrEMBLA0A3P6DNB40.0A0A3P6DNB4_BRACM; Uncharacterized protein
STRINGBo9g175710.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66728133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12250.20.0TGACG motif-binding factor 6
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]