PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013616314.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bZIP
Protein Properties Length: 326aa    MW: 36643.1 Da    PI: 9.2571
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013616314.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_130.76.7e-104182445
                    XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1  4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45
                     k  rr+++NReAAr+sR+RKka++++Le+   +L++  ++L
  XP_013616314.1 41 QKTVRRLAQNREAARKSRLRKKAYVQQLENSRLKLTQLEQEL 82
                    577799***********************9877777766555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1702.8E-83485No hitNo description
SMARTSM003386.1E-838101IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.4384084IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.18E-74285No hitNo description
PfamPF001705.9E-74282IPR004827Basic-leucine zipper domain
PROSITE patternPS0003604560IPR004827Basic-leucine zipper domain
PfamPF141441.4E-32125200IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009410Biological Processresponse to xenobiotic stimulus
GO:0009863Biological Processsalicylic acid mediated signaling pathway
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MGDTSPRTSG STDGDMDQNN LMYDGGHVGE SSDRSKEKMD QKTVRRLAQN REAARKSRLR  60
KKAYVQQLEN SRLKLTQLEQ ELQRARQQGV FISSSGDQAH STTGNGAMAF DAEYRRWQED  120
KNRKMKELSS ALDSHASEPE LRTIVEAVLA HYEELFRIKS NAAKNDVFHL LSGMWKTPAE  180
RCFLWLGGFR SSDLLKLIAS QVEPLTEQQS QDLNNLQESS QQAEDALSQG MDSLQQSLSE  240
TLSSGTLGSS SSGNVANYMG QMAMAMGKLG TLEGFIRQAD NLRLQTYQQM LRKLTTRQSA  300
RALLAIHEYS LRLRALSSLW LARPRE
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in roots.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00493DAPTransfer from AT5G06960Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013616314.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ7889450.0FJ788945.1 Brassica napus TGA5 transcription factor (TGA5.2) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013616314.10.0PREDICTED: transcription factor TGA5
RefseqXP_013693455.10.0transcription factor TGA5
SwissprotQ391630.0TGA5_ARATH; Transcription factor TGA5
TrEMBLA0A078FLY20.0A0A078FLY2_BRANA; BnaC02g01780D protein
TrEMBLA0A0D3AI120.0A0A0D3AI12_BRAOL; Uncharacterized protein
STRINGBo2g007460.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66728133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06960.21e-171OCS-element binding factor 5
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Zander M,Thurow C,Gatz C
    TGA Transcription Factors Activate the Salicylic Acid-Suppressible Branch of the Ethylene-Induced Defense Program by Regulating ORA59 Expression.
    Plant Physiol., 2014. 165(4): p. 1671-1683
    [PMID:24989234]
  4. Walper E,Weiste C,Mueller MJ,Hamberg M,Dröge-Laser W
    Screen Identifying Arabidopsis Transcription Factors Involved in the Response to 9-Lipoxygenase-Derived Oxylipins.
    PLoS ONE, 2016. 11(4): p. e0153216
    [PMID:27073862]
  5. Huang LJ, et al.
    Ectopically expressed glutaredoxin ROXY19 negatively regulates the detoxification pathway in Arabidopsis thaliana.
    BMC Plant Biol., 2016. 16(1): p. 200
    [PMID:27624344]