PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_23249_BGI-A2_v1.0
Common NameF383_10543
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bZIP
Protein Properties Length: 446aa    MW: 49328.4 Da    PI: 6.5085
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_23249_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1301.2e-09151192546
                                 CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                      bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLk 46 
                                 k   r+++NReAAr+sR+RKka++++Le     L++  ++L+
  Cotton_A_23249_BGI-A2_v1.0 151 KTLQRLAQNREAARKSRLRKKAYVQQLESSRLRLTQLEQELQ 192
                                 66789***********************97777776666655 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.7E-7146194No hitNo description
SMARTSM003381.7E-7147218IPR004827Basic-leucine zipper domain
PfamPF077161.8E-5149193IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.128149193IPR004827Basic-leucine zipper domain
CDDcd147085.32E-23151201No hitNo description
SuperFamilySSF579596.88E-7151194No hitNo description
PROSITE patternPS000360155169IPR004827Basic-leucine zipper domain
PfamPF141448.2E-29245318IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MQSFKAAAPH TTPDMFCHSS FFLRGDDDFN PAKAFHHDDS VDLSSGSIFS LKSSNVDVVG  60
NSLHYDAFNT GIRAAEIVSS GTGCLDTGQF MYQKGTTLGN GHIENWGDSG LADNSQQTDT  120
STDVDTDDKN QLQHGAIITV DQSKLKTGDQ KTLQRLAQNR EAARKSRLRK KAYVQQLESS  180
RLRLTQLEQE LQKARQQGIF IVSGLSGGHG LSVSGNGEEV FDTVHAALAF DMDYAHWLNE  240
HQRLINDLRS GLNSHLGDSE LRILVESVMA HYDEVFKLKS IGVKADAFHM LSGMWKTPAE  300
RCFMWLGGFR SSELLKILGN HLEPLTDQQL MGICNLQQSS QQAEDALSQG MEALQQALVD  360
PLSSACLGPT ASGNVADYMS QMAIAMSKLA TLENFLHQAD LLRHQTLQQM HRILTTRQAA  420
RALLVFSDYN SRLRALSSLW LARPRN
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in the determination of floral organ number. Acts to determine floral organ patterning by establishing floral organ primordia in specific numbers and positions. Plays a role in regulating stem cell fate by directly controlling AG expression. Binds to the 5'-AAGAAT-3' cis-acting element found in AG promoter. Might represent a target for a post-translational modification by GRXC7/ROXY1. {ECO:0000269|PubMed:19395638, ECO:0000269|PubMed:19395639, ECO:0000269|PubMed:9990857}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017616801.10.0PREDICTED: transcription factor HBP-1b(c38)-like isoform X1
SwissprotQ9SX271e-175PAN_ARATH; Transcription factor PERIANTHIA
TrEMBLA0A2P5Y0M60.0A0A2P5Y0M6_GOSBA; Uncharacterized protein
STRINGGorai.013G081100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66728133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68640.11e-147bZIP family protein
Publications ? help Back to Top
  1. Maier AT,Stehling-Sun S,Offenburger SL,Lohmann JU
    The bZIP Transcription Factor PERIANTHIA: A Multifunctional Hub for Meristem Control.
    Front Plant Sci, 2011. 2: p. 79
    [PMID:22645551]
  2. Chandler JW,Werr W
    Arabidopsis floral phytomer development: auxin response relative to biphasic modes of organ initiation.
    J. Exp. Bot., 2014. 65(12): p. 3097-110
    [PMID:24744428]
  3. Wynn AN,Seaman AA,Jones AL,Franks RG
    Novel functional roles for PERIANTHIA and SEUSS during floral organ identity specification, floral meristem termination, and gynoecial development.
    Front Plant Sci, 2014. 5: p. 130
    [PMID:24778638]
  4. Gutsche N,Zachgo S
    The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding.
    PLoS ONE, 2016. 11(4): p. e0153810
    [PMID:27128442]
  5. de Luis Balaguer MA, et al.
    Predicting gene regulatory networks by combining spatial and temporal gene expression data in Arabidopsis root stem cells.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(36): p. E7632-E7640
    [PMID:28827319]