PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cotton_A_23249_BGI-A2_v1.0 | ||||||||
Common Name | F383_10543 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | bZIP | ||||||||
Protein Properties | Length: 446aa MW: 49328.4 Da PI: 6.5085 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 30 | 1.2e-09 | 151 | 192 | 5 | 46 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLk 46 k r+++NReAAr+sR+RKka++++Le L++ ++L+ Cotton_A_23249_BGI-A2_v1.0 151 KTLQRLAQNREAARKSRLRKKAYVQQLESSRLRLTQLEQELQ 192 66789***********************97777776666655 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 1.7E-7 | 146 | 194 | No hit | No description |
SMART | SM00338 | 1.7E-7 | 147 | 218 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF07716 | 1.8E-5 | 149 | 193 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.128 | 149 | 193 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14708 | 5.32E-23 | 151 | 201 | No hit | No description |
SuperFamily | SSF57959 | 6.88E-7 | 151 | 194 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 155 | 169 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF14144 | 8.2E-29 | 245 | 318 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 446 aa Download sequence Send to blast |
MQSFKAAAPH TTPDMFCHSS FFLRGDDDFN PAKAFHHDDS VDLSSGSIFS LKSSNVDVVG 60 NSLHYDAFNT GIRAAEIVSS GTGCLDTGQF MYQKGTTLGN GHIENWGDSG LADNSQQTDT 120 STDVDTDDKN QLQHGAIITV DQSKLKTGDQ KTLQRLAQNR EAARKSRLRK KAYVQQLESS 180 RLRLTQLEQE LQKARQQGIF IVSGLSGGHG LSVSGNGEEV FDTVHAALAF DMDYAHWLNE 240 HQRLINDLRS GLNSHLGDSE LRILVESVMA HYDEVFKLKS IGVKADAFHM LSGMWKTPAE 300 RCFMWLGGFR SSELLKILGN HLEPLTDQQL MGICNLQQSS QQAEDALSQG MEALQQALVD 360 PLSSACLGPT ASGNVADYMS QMAIAMSKLA TLENFLHQAD LLRHQTLQQM HRILTTRQAA 420 RALLVFSDYN SRLRALSSLW LARPRN |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator involved in the determination of floral organ number. Acts to determine floral organ patterning by establishing floral organ primordia in specific numbers and positions. Plays a role in regulating stem cell fate by directly controlling AG expression. Binds to the 5'-AAGAAT-3' cis-acting element found in AG promoter. Might represent a target for a post-translational modification by GRXC7/ROXY1. {ECO:0000269|PubMed:19395638, ECO:0000269|PubMed:19395639, ECO:0000269|PubMed:9990857}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017616801.1 | 0.0 | PREDICTED: transcription factor HBP-1b(c38)-like isoform X1 | ||||
Swissprot | Q9SX27 | 1e-175 | PAN_ARATH; Transcription factor PERIANTHIA | ||||
TrEMBL | A0A2P5Y0M6 | 0.0 | A0A2P5Y0M6_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.013G081100.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM667 | 28 | 133 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G68640.1 | 1e-147 | bZIP family protein |