PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.0430s0055.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | bZIP | ||||||||
Protein Properties | Length: 332aa MW: 36990.6 Da PI: 9.0277 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 30.6 | 7.4e-10 | 47 | 87 | 5 | 45 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 k rr+++NReAAr+sR+RKka++++Le+ +L++ ++L Cagra.0430s0055.1.p 47 KTLRRLAQNREAARKSRLRKKAYVQQLENSRLKLTQLEQEL 87 7889************************9877777766555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 6.2E-8 | 37 | 90 | No hit | No description |
SMART | SM00338 | 1.8E-6 | 43 | 106 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.438 | 45 | 89 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 6.9E-7 | 47 | 87 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 5.63E-7 | 47 | 90 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 50 | 65 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF14144 | 1.4E-34 | 129 | 204 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009410 | Biological Process | response to xenobiotic stimulus | ||||
GO:0009627 | Biological Process | systemic acquired resistance | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 332 aa Download sequence Send to blast |
MADTSSRTDV STDGDTDHRD LGSERGQMML PAASDSSDRS KDKLDQKTLR RLAQNREAAR 60 KSRLRKKAYV QQLENSRLKL TQLEQELQRA RQQGVFISSS GDQAHSTGGN GALAFDAEHS 120 RWLEEKNRQM NELRSALNAH AGDTELRTIV DGVMAHYEEL FRIKSNAAKN DVFHLLSGMW 180 KTPAERCFLW LGGFRSSELL KLLANQLEPM TERQVMGLNS LQQTSQQAED ALSQGMESLQ 240 QTLADTLSSG TLGSSSSDNV ASYMGQMAMA MGQLGTLEGF IRQADNLRLQ TLQQMLRVLT 300 TRQSARALLA IHDYSSRLRA LSSLWLARPR E* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00349 | DAP | Transfer from AT3G12250 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.0430s0055.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ320540 | 0.0 | AJ320540.1 Arabidopsis thaliana mRNA for transcription factor TGA6 (AtbZIP45 gene). | |||
GenBank | BT029515 | 0.0 | BT029515.1 Arabidopsis thaliana At3g12250 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023642251.1 | 0.0 | transcription factor TGA6 isoform X2 | ||||
Swissprot | Q39140 | 0.0 | TGA6_ARATH; Transcription factor TGA6 | ||||
TrEMBL | A0A1J3EBC8 | 0.0 | A0A1J3EBC8_NOCCA; Transcription factor TGA6 | ||||
STRING | Cagra.0430s0055.1.p | 0.0 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM667 | 28 | 133 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12250.2 | 0.0 | TGACG motif-binding factor 6 |
Link Out ? help Back to Top | |
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Phytozome | Cagra.0430s0055.1.p |