PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC951_p3
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bZIP
Protein Properties Length: 419aa    MW: 47349.1 Da    PI: 10.4121
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC951_p3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_130.29.5e-10131171545
                CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 
                k  rr+++NReAAr+sR+RKka++++Le+   +L++  ++L
  RrC951_p3 131 KTVRRLAQNREAARKSRLRKKAYVQQLENSRLKLTQLEQEL 171
                7789************************9877777766555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.5E-7127190IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.438129173IPR004827Basic-leucine zipper domain
PfamPF001709.0E-7131171IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1705.3E-8131176No hitNo description
SuperFamilySSF579595.27E-7131174No hitNo description
PROSITE patternPS000360134149IPR004827Basic-leucine zipper domain
PfamPF141444.2E-33218292IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009410Biological Processresponse to xenobiotic stimulus
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
RTKTCRRLDI RILSLSLSLF SLLLGFKSDY KAQPFLQWTF PLQHTKRCSF FKFQSVHTRE  60
VSRVLYCKRG RHKWILSLAI KCVSTEASMA DMSPITDVST DGDRDLGSEG ALVNTAASDS  120
SERSKNKLDQ KTVRRLAQNR EAARKSRLRK KAYVQQLENS RLKLTQLEQE LQRARQQGVF  180
ISSTGDQAHS TGGNGWLNRA LAFDAEYSRW LEEKNKRMNE LRSALNAHAG DGELRIIVDG  240
VMAHYEELFR IKSNAAKNDV FHLLYGMWKT PAERCFLWLG GFRSSEILKL LANQLEPMTE  300
RQVMGINSLQ ETSQQAEDAL SQGMESLQQS LADTLSSGTL GSSSSGNVAS YMGQMAMAMG  360
KLGTLEGFIR QADNLRLQTL QQMIRVLTTR QSARALLAIH DYSSRLRALS SLWLARPRE
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00492DAPTransfer from AT5G06950Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3531250.0AK353125.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-10-O14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018445153.10.0PREDICTED: transcription factor TGA2-like
RefseqXP_018445154.10.0PREDICTED: transcription factor TGA2-like
RefseqXP_018445155.10.0PREDICTED: transcription factor TGA2-like
RefseqXP_018445327.10.0PREDICTED: transcription factor TGA2-like
RefseqXP_018445328.10.0PREDICTED: transcription factor TGA2-like
RefseqXP_018445329.10.0PREDICTED: transcription factor TGA2-like
SwissprotQ391400.0TGA6_ARATH; Transcription factor TGA6
TrEMBLA0A3P6DNB40.0A0A3P6DNB4_BRACM; Uncharacterized protein
STRINGBo9g175710.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66728133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12250.20.0TGACG motif-binding factor 6