PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_20542_BGI-A2_v1.0
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bZIP
Protein Properties Length: 440aa    MW: 49030.4 Da    PI: 9.3831
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_20542_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_130.48.6e-10153194445
                                 XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                      bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 
                                  k  rr+++NReAAr+sR+RKka++++Le    +L++  ++L
  Cotton_A_20542_BGI-A2_v1.0 153 QKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQEL 194
                                 6889*************************9777777666555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1709.4E-8144197No hitNo description
SMARTSM003384.6E-9150213IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.415152196IPR004827Basic-leucine zipper domain
CDDcd147082.33E-21154206No hitNo description
SuperFamilySSF579596.88E-7154197No hitNo description
PfamPF001707.3E-7154194IPR004827Basic-leucine zipper domain
PROSITE patternPS000360157172IPR004827Basic-leucine zipper domain
PfamPF141444.4E-31237311IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MDFSGKEANT ICSSRISNFR TLRQSLGFCI EDAIDLMQRM QCMGALTLKP PSVMSNMDNL  60
FNYIKSSSEA VADAQFGALS KGHRLNTTKR SCQILYLISW SGELGGSSMA DASPRTDTST  120
DDTDEKNQRF GRGQMNAIVA SDSSDRSKDK TDQKTLRRLA QNREAARKSR LRKKAYVQQL  180
ESSRLKLTQL EQELQRARQQ GIFISSSGDQ SHSMSGNGAL AFDVEYARWL EEHNRKINEL  240
RTAVNSHAGD AELRIIVDSV TTHFDDIFRL KGTAAKADVF HILSGMWKTP AERCFLWIGG  300
FRSSELLKLL SNQLEPLTEQ QFMGIQKLQQ SSQQAEDSLS QGMEALQQSL AETLANGSPS  360
APSGSSGNVA NYMGQMAMAM GKLGTLEGFL LQADNLRQQT LQQMHRILTT RQSARALLAI  420
NDYFSRLRAL SSLWLARPRE
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017619726.10.0PREDICTED: transcription factor HBP-1b(c38)-like isoform X2
SwissprotO241600.0TGA21_TOBAC; TGACG-sequence-specific DNA-binding protein TGA-2.1
TrEMBLA0A0D2TRW40.0A0A0D2TRW4_GOSRA; Uncharacterized protein
STRINGGorai.007G352600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66728133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06950.41e-132bZIP family protein