PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_20542_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bZIP | ||||||||
Protein Properties | Length: 440aa MW: 49030.4 Da PI: 9.3831 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 30.4 | 8.6e-10 | 153 | 194 | 4 | 45 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 k rr+++NReAAr+sR+RKka++++Le +L++ ++L Cotton_A_20542_BGI-A2_v1.0 153 QKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQEL 194 6889*************************9777777666555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 9.4E-8 | 144 | 197 | No hit | No description |
SMART | SM00338 | 4.6E-9 | 150 | 213 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.415 | 152 | 196 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14708 | 2.33E-21 | 154 | 206 | No hit | No description |
SuperFamily | SSF57959 | 6.88E-7 | 154 | 197 | No hit | No description |
Pfam | PF00170 | 7.3E-7 | 154 | 194 | IPR004827 | Basic-leucine zipper domain |
PROSITE pattern | PS00036 | 0 | 157 | 172 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF14144 | 4.4E-31 | 237 | 311 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 440 aa Download sequence Send to blast |
MDFSGKEANT ICSSRISNFR TLRQSLGFCI EDAIDLMQRM QCMGALTLKP PSVMSNMDNL 60 FNYIKSSSEA VADAQFGALS KGHRLNTTKR SCQILYLISW SGELGGSSMA DASPRTDTST 120 DDTDEKNQRF GRGQMNAIVA SDSSDRSKDK TDQKTLRRLA QNREAARKSR LRKKAYVQQL 180 ESSRLKLTQL EQELQRARQQ GIFISSSGDQ SHSMSGNGAL AFDVEYARWL EEHNRKINEL 240 RTAVNSHAGD AELRIIVDSV TTHFDDIFRL KGTAAKADVF HILSGMWKTP AERCFLWIGG 300 FRSSELLKLL SNQLEPLTEQ QFMGIQKLQQ SSQQAEDSLS QGMEALQQSL AETLANGSPS 360 APSGSSGNVA NYMGQMAMAM GKLGTLEGFL LQADNLRQQT LQQMHRILTT RQSARALLAI 420 NDYFSRLRAL SSLWLARPRE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017619726.1 | 0.0 | PREDICTED: transcription factor HBP-1b(c38)-like isoform X2 | ||||
Swissprot | O24160 | 0.0 | TGA21_TOBAC; TGACG-sequence-specific DNA-binding protein TGA-2.1 | ||||
TrEMBL | A0A0D2TRW4 | 0.0 | A0A0D2TRW4_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.007G352600.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM667 | 28 | 133 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06950.4 | 1e-132 | bZIP family protein |