PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10031441m

Common Name

CICLE_v10031441mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

bZIP

Protein Properties

Length: 467aa MW: 51169.6 Da PI: 6.9245

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10031441m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	30.7	7.1e-10	179	217	4	39
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLee...kvkeLe 39 k+ rr+++NReAAr+sR+RKka++++Le+ + ++Le Ciclev10031441m 179 QKALRRLAQNREAARKSRLRKKAYVQQLENsrlRLAQLE 217 5889*************************8333444444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	4.1E-7	175	222	No hit	No description
SMART	SM00338	4.1E-8	176	247	IPR004827	Basic-leucine zipper domain
Pfam	PF07716	1.4E-5	178	222	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.301	178	222	IPR004827	Basic-leucine zipper domain
CDD	cd14708	4.89E-23	180	232	No hit	No description
SuperFamily	SSF57959	2.81E-6	180	222	No hit	No description
PROSITE pattern	PS00036	0	183	198	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	2.8E-30	265	338	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009909	Biological Process	regulation of flower development
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 467 aa Download sequence Send to blast
MQSFKAPHIN PDVFCHSSLF LRGIDENSRN QARFADLGEL EQQPFHNHVD LSPSSMFSLK 60 SNNITVASNI TVASNNLHYN TLSSSIGCAT DIVATTGAAA GGCLDTGQFM FQKGTTIGSS 120 LGSGHIENWG ESGIGDNSQQ TDTSTDVDTD DKNQVNGVRR GVPIVTGSME QSKIKTGDQK 180 ALRRLAQNRE AARKSRLRKK AYVQQLENSR LRLAQLEQEL QRARQQGIFI ATGVSGDIGH 240 SVAGNGVLAF DLDYVHWVDE HQRLINDLRS AVNSSMGDNE LRHLVDGVMA HYEEVFQLKS 300 IGTKADVFHM LSGMWKTPVE RCFMWLGGFR SSELLKVIGN HLEPLTDQQL MGICNLQQSS 360 QQAEDALSQG MEALQQSLVD TLSASSLGPT SSGNVADYMG QMALAMGKLA TLENFIHQAD 420 LLRQQTLQQM HRILTARQAA RALLVINDYT SRLRALSSLW LARPRG*

Sequence ? help Back to Top

Protein Sequence Length: 467 aa Download sequence Send to blast

MQSFKAPHIN PDVFCHSSLF LRGIDENSRN QARFADLGEL EQQPFHNHVD LSPSSMFSLK  60
SNNITVASNI TVASNNLHYN TLSSSIGCAT DIVATTGAAA GGCLDTGQFM FQKGTTIGSS  120
LGSGHIENWG ESGIGDNSQQ TDTSTDVDTD DKNQVNGVRR GVPIVTGSME QSKIKTGDQK  180
ALRRLAQNRE AARKSRLRKK AYVQQLENSR LRLAQLEQEL QRARQQGIFI ATGVSGDIGH  240
SVAGNGVLAF DLDYVHWVDE HQRLINDLRS AVNSSMGDNE LRHLVDGVMA HYEEVFQLKS  300
IGTKADVFHM LSGMWKTPVE RCFMWLGGFR SSELLKVIGN HLEPLTDQQL MGICNLQQSS  360
QQAEDALSQG MEALQQSLVD TLSASSLGPT SSGNVADYMG QMALAMGKLA TLENFIHQAD  420
LLRQQTLQQM HRILTARQAA RALLVINDYT SRLRALSSLW LARPRG*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed in the apical meristem, the floral meristem, each whorl of organ primordia, and in ovule primordia during wild-type flower development. {ECO:0000269\|PubMed:9990857}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator involved in the determination of floral organ number. Acts to determine floral organ patterning by establishing floral organ primordia in specific numbers and positions. Plays a role in regulating stem cell fate by directly controlling AG expression. Binds to the 5'-AAGAAT-3' cis-acting element found in AG promoter. Might represent a target for a post-translational modification by GRXC7/ROXY1. {ECO:0000269\|PubMed:19395638, ECO:0000269\|PubMed:19395639, ECO:0000269\|PubMed:9990857}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006437714.1	0.0	transcription factor TGA2.3 isoform X2
Swissprot	Q9SX27	0.0	PAN_ARATH; Transcription factor PERIANTHIA
TrEMBL	V4VEQ8	0.0	V4VEQ8_9ROSI; Uncharacterized protein
STRING	XP_006437714.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM667	28	133

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68640.1	1e-158	bZIP family protein

Link Out ? help Back to Top
Phytozome	Ciclev10031441m
Entrez Gene	18045267

Publications ? help Back to Top
Maier AT,Stehling-Sun S,Offenburger SL,Lohmann JU The bZIP Transcription Factor PERIANTHIA: A Multifunctional Hub for Meristem Control. Front Plant Sci, 2011. 2: p. 79 [PMID:22645551] Chandler JW,Werr W Arabidopsis floral phytomer development: auxin response relative to biphasic modes of organ initiation. J. Exp. Bot., 2014. 65(12): p. 3097-110 [PMID:24744428] Wynn AN,Seaman AA,Jones AL,Franks RG Novel functional roles for PERIANTHIA and SEUSS during floral organ identity specification, floral meristem termination, and gynoecial development. Front Plant Sci, 2014. 5: p. 130 [PMID:24778638] Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] de Luis Balaguer MA, et al. Predicting gene regulatory networks by combining spatial and temporal gene expression data in Arabidopsis root stem cells. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(36): p. E7632-E7640 [PMID:28827319]