PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_28674_BGI-A2_v1.0

Common Name

F383_20089

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bZIP

Protein Properties

Length: 459aa MW: 50398.6 Da PI: 6.7563

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_28674_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	31.2	4.8e-10	173	211	5	43
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNk 43 k rr+++NReAAr+sR+RKka++++Le L++ + Cotton_A_28674_BGI-A2_v1.0 173 KTLRRLAQNREAARKSRLRKKAYVQQLESSRLRLTELEQ 211 788*************************86666555554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	1.1E-7	165	216	No hit	No description
SMART	SM00338	5.1E-10	169	240	IPR004827	Basic-leucine zipper domain
Pfam	PF07716	3.6E-7	171	215	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.438	171	215	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	7.74E-7	173	216	No hit	No description
CDD	cd14708	4.10E-24	173	225	No hit	No description
PROSITE pattern	PS00036	0	176	191	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	8.1E-30	258	331	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009909	Biological Process	regulation of flower development
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 459 aa Download sequence Send to blast
MQSFKAAATT NPDMFCHSSF FLRGDDCNSR NQTRFPDLGE LDHPAAAFHH DDAFDLSPSS 60 IFSLKSNNVG VVANCLHYGA LNTSIGATAI VSSGTGCLDT GQFMYQKGAT FGASLGNGHI 120 ENWADSGLAD NSQQTDTSTD VDTDHKNQLH GVQNAAVMVD SVDQSKSKSG DQKTLRRLAQ 180 NREAARKSRL RKKAYVQQLE SSRLRLTELE QELQRARQQG IFIASGLSGD HGHTVAGNAA 240 LAFDMEYGRW LDEHQRLIND LRSAVNSHMG DNELCILVGG VMAHYDEVFR LKSIGAKADV 300 FHMLSGMWKT PAERCFMWLG GFRSSELLKI LGNHLEPLTD QQLMGICNLQ QSSQQAEDAL 360 SQGMEALQQS LVDTLSSASL GPSASGNVAD YMGQMAIAMG KLATLENFLH QADLLRQQTL 420 QQMHRILTTR QAARALLVFS DYTSRLRALS SLWLARPRN

Sequence ? help Back to Top

Protein Sequence Length: 459 aa Download sequence Send to blast

MQSFKAAATT NPDMFCHSSF FLRGDDCNSR NQTRFPDLGE LDHPAAAFHH DDAFDLSPSS  60
IFSLKSNNVG VVANCLHYGA LNTSIGATAI VSSGTGCLDT GQFMYQKGAT FGASLGNGHI  120
ENWADSGLAD NSQQTDTSTD VDTDHKNQLH GVQNAAVMVD SVDQSKSKSG DQKTLRRLAQ  180
NREAARKSRL RKKAYVQQLE SSRLRLTELE QELQRARQQG IFIASGLSGD HGHTVAGNAA  240
LAFDMEYGRW LDEHQRLIND LRSAVNSHMG DNELCILVGG VMAHYDEVFR LKSIGAKADV  300
FHMLSGMWKT PAERCFMWLG GFRSSELLKI LGNHLEPLTD QQLMGICNLQ QSSQQAEDAL  360
SQGMEALQQS LVDTLSSASL GPSASGNVAD YMGQMAIAMG KLATLENFLH QADLLRQQTL  420
QQMHRILTTR QAARALLVFS DYTSRLRALS SLWLARPRN

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator involved in the determination of floral organ number. Acts to determine floral organ patterning by establishing floral organ primordia in specific numbers and positions. Plays a role in regulating stem cell fate by directly controlling AG expression. Binds to the 5'-AAGAAT-3' cis-acting element found in AG promoter. Might represent a target for a post-translational modification by GRXC7/ROXY1. {ECO:0000269\|PubMed:19395638, ECO:0000269\|PubMed:19395639, ECO:0000269\|PubMed:9990857}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017641831.1	0.0	PREDICTED: transcription factor HBP-1b(c38)-like
Swissprot	Q9SX27	0.0	PAN_ARATH; Transcription factor PERIANTHIA
TrEMBL	A0A0B0NQX8	0.0	A0A0B0NQX8_GOSAR; Transcription factor PERIANTHIA-like protein
STRING	Gorai.008G185000.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM667	28	133

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68640.1	1e-144	bZIP family protein

Publications ? help Back to Top
Maier AT,Stehling-Sun S,Offenburger SL,Lohmann JU The bZIP Transcription Factor PERIANTHIA: A Multifunctional Hub for Meristem Control. Front Plant Sci, 2011. 2: p. 79 [PMID:22645551] Chandler JW,Werr W Arabidopsis floral phytomer development: auxin response relative to biphasic modes of organ initiation. J. Exp. Bot., 2014. 65(12): p. 3097-110 [PMID:24744428] Wynn AN,Seaman AA,Jones AL,Franks RG Novel functional roles for PERIANTHIA and SEUSS during floral organ identity specification, floral meristem termination, and gynoecial development. Front Plant Sci, 2014. 5: p. 130 [PMID:24778638] Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] de Luis Balaguer MA, et al. Predicting gene regulatory networks by combining spatial and temporal gene expression data in Arabidopsis root stem cells. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(36): p. E7632-E7640 [PMID:28827319]