PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00074319001

Common Name

GSBRNA2T00074319001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bZIP

Protein Properties

Length: 325aa MW: 36050.3 Da PI: 6.0683

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00074319001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	30.6	7.2e-10	70	110	5	45
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 k rr+++NReAAr+sR+RKka++++Le+ +L++ ++L GSBRNA2T00074319001 70 KTLRRLAQNREAARKSRLRKKAYVQQLENSRLKLTQLEQEL 110 7889************************9877777766555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	6.0E-8	60	113	No hit	No description
SMART	SM00338	1.8E-6	66	129	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.438	68	112	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	6.7E-7	70	110	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	6.19E-7	70	113	No hit	No description
CDD	cd14708	3.53E-22	70	122	No hit	No description
PROSITE pattern	PS00036	0	73	88	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	2.1E-34	152	227	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 325 aa Download sequence Send to blast
MADTSSRTDA STDGDTDPRD LGSFYNLYSV IRGRLEPGFP WDILPSERGQ VMLAGASDSS 60 DRSKDKLDQK TLRRLAQNRE AARKSRLRKK AYVQQLENSR LKLTQLEQEL QRARQQGVFI 120 SSSGDQAHST GGNGALAFDA EYSRWLEEKN RQMNELRSAL NAHAGDTELR TIVDGVMAHY 180 EELFRIKSNA AKNDVFHILS GMWKTPAERC FLWLGGFRSS ELLKLLANQL EPMTERQVLG 240 INSLQQTSQQ AEDALSQGME SLQQSLAETL SSGTLGSCSS DNVASYMGQM AMAMGQLGTL 300 EGFIRQVHLE CYGTTQSGCV VYRE*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.8650	1e-169	seed

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed primarily in roots of young seedlings and later expressed in aging cotyledons, mesophyll cells of hydathodes on leaf margins, vascular tissue and trichomes of senescing rosette leaves. Also detected in young lateral roots and in mature pollen grains.
Uniprot	TISSUE SPECIFICITY: Expressed predominantly in roots and flowers.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00074319001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB493610	0.0	AB493610.1 Arabidopsis thaliana At3g12250 mRNA for hypothetical protein, partial cds, clone: RAAt3g12250.
GenBank	AJ320540	0.0	AJ320540.1 Arabidopsis thaliana mRNA for transcription factor TGA6 (AtbZIP45 gene).
GenBank	BT029515	0.0	BT029515.1 Arabidopsis thaliana At3g12250 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013731750.1	0.0	transcription factor TGA6-like isoform X6
Swissprot	Q39140	0.0	TGA6_ARATH; Transcription factor TGA6
TrEMBL	A0A078HZG7	0.0	A0A078HZG7_BRANA; BnaC05g40810D protein
STRING	XP_010464987.1	0.0	(Camelina sativa)
STRING	XP_010486922.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM667	28	133

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12250.4	1e-162	TGACG motif-binding factor 6

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]