PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010532205.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

bZIP

Protein Properties

Length: 453aa MW: 50458.6 Da PI: 5.4419

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010532205.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	28.7	2.9e-09	165	206	5	46
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLk 46 k rr ++NReAAr+sR+R+ka++++Le+ L + ++Lk XP_010532205.1 165 KTLRRQAQNREAARKSRLRRKAYVQQLENSRLRLAQLEDELK 206 7789************************96666655555555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50217	9.289	163	207	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.1E-6	164	205	No hit	No description
SMART	SM00338	0.0074	164	219	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	6.6E-7	165	204	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.81E-6	166	207	No hit	No description
PROSITE pattern	PS00036	0	168	183	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	9.4E-27	250	324	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 453 aa Download sequence Send to blast
MKSSVKAAPF SSDFYCQSSF FYRGNGGGLE EIHQPTTGFH HEEAVDLSPT PADVTVDCTN 60 LHYATYDTVM DYGLRDGVEG EAGCLDTGQS VFQKGITIGA MTTSVNGYCG NTVEKCCDSV 120 SAMADNSRHT DTSTDIDTDD KTQLNGVQQG KDCADQSKAI SGNQKTLRRQ AQNREAARKS 180 RLRRKAYVQQ LENSRLRLAQ LEDELKSAPQ QGYLVESGVP VDHSHKVSSN GTFAFELEYA 240 RWIEEHERLI SDLRSAVDLQ LGDTELRVMV DAVMAHYDEI FRLKGIGSKA DVFHMLSGIW 300 TTPAERFFMW LGGFRSSELL RVLRNHLDPL TDQQFLGICN LQQSSLQAEE ALSQGMEALQ 360 QSLMETLSST ASLVCPNSPA NVADYMGQMA VAMSKLSTLE TFLRQADLLR QQTLQQLHRI 420 LTTRQSARAF LVIHDYVSRL RALNSLWLAR PED

Sequence ? help Back to Top

Protein Sequence Length: 453 aa Download sequence Send to blast

MKSSVKAAPF SSDFYCQSSF FYRGNGGGLE EIHQPTTGFH HEEAVDLSPT PADVTVDCTN  60
LHYATYDTVM DYGLRDGVEG EAGCLDTGQS VFQKGITIGA MTTSVNGYCG NTVEKCCDSV  120
SAMADNSRHT DTSTDIDTDD KTQLNGVQQG KDCADQSKAI SGNQKTLRRQ AQNREAARKS  180
RLRRKAYVQQ LENSRLRLAQ LEDELKSAPQ QGYLVESGVP VDHSHKVSSN GTFAFELEYA  240
RWIEEHERLI SDLRSAVDLQ LGDTELRVMV DAVMAHYDEI FRLKGIGSKA DVFHMLSGIW  300
TTPAERFFMW LGGFRSSELL RVLRNHLDPL TDQQFLGICN LQQSSLQAEE ALSQGMEALQ  360
QSLMETLSST ASLVCPNSPA NVADYMGQMA VAMSKLSTLE TFLRQADLLR QQTLQQLHRI  420
LTTRQSARAF LVIHDYVSRL RALNSLWLAR PED

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator involved in the determination of floral organ number. Acts to determine floral organ patterning by establishing floral organ primordia in specific numbers and positions. Plays a role in regulating stem cell fate by directly controlling AG expression. Binds to the 5'-AAGAAT-3' cis-acting element found in AG promoter. Might represent a target for a post-translational modification by GRXC7/ROXY1. {ECO:0000269\|PubMed:19395638, ECO:0000269\|PubMed:19395639, ECO:0000269\|PubMed:9990857}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010532205.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019058899.1	0.0	PREDICTED: transcription factor PERIANTHIA-like
Swissprot	Q9SX27	0.0	PAN_ARATH; Transcription factor PERIANTHIA
TrEMBL	V4MB25	0.0	V4MB25_EUTSA; Uncharacterized protein
STRING	XP_010532205.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM667	28	133

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68640.1	0.0	bZIP family protein

Publications ? help Back to Top
Maier AT,Stehling-Sun S,Offenburger SL,Lohmann JU The bZIP Transcription Factor PERIANTHIA: A Multifunctional Hub for Meristem Control. Front Plant Sci, 2011. 2: p. 79 [PMID:22645551] Chandler JW,Werr W Arabidopsis floral phytomer development: auxin response relative to biphasic modes of organ initiation. J. Exp. Bot., 2014. 65(12): p. 3097-110 [PMID:24744428] Wynn AN,Seaman AA,Jones AL,Franks RG Novel functional roles for PERIANTHIA and SEUSS during floral organ identity specification, floral meristem termination, and gynoecial development. Front Plant Sci, 2014. 5: p. 130 [PMID:24778638] Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] de Luis Balaguer MA, et al. Predicting gene regulatory networks by combining spatial and temporal gene expression data in Arabidopsis root stem cells. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(36): p. E7632-E7640 [PMID:28827319]