PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G185000.1
Common NameB456_008G185000, LOC105764552
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bZIP
Protein Properties Length: 460aa    MW: 50381.6 Da    PI: 6.7582
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G185000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_131.24.8e-10173211543
                         CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNk 43 
                         k  rr+++NReAAr+sR+RKka++++Le     L++  +
  Gorai.008G185000.1 173 KTLRRLAQNREAARKSRLRKKAYVQQLESSRLRLTELEQ 211
                         788*************************86666555554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.1E-7165216No hitNo description
SMARTSM003385.1E-10169240IPR004827Basic-leucine zipper domain
PfamPF077163.6E-7171215IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.438171215IPR004827Basic-leucine zipper domain
SuperFamilySSF579597.74E-7173216No hitNo description
CDDcd147084.19E-24173225No hitNo description
PROSITE patternPS000360176191IPR004827Basic-leucine zipper domain
PfamPF141448.1E-30258331IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009909Biological Processregulation of flower development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 460 aa     Download sequence    Send to blast
MQSFKAAATT NPDMFCHSSF FLRGDDCNSR NQTRFPDLGE LDHPAAAFHH DDAFDLSPSS  60
IFSLKSNNVG VVANTLHYGA LNTSIGATAI VSSGTGCLDT GQFMYQKGAT FGASLGNGHI  120
ENWADSGLAD NSQQTDTSTD VDTDHKNQLH GVQLGAVMVD SVDQSKSKSG DQKTLRRLAQ  180
NREAARKSRL RKKAYVQQLE SSRLRLTELE QELQRARQQG IFIASGLSGD HGHTVAGNAA  240
LAFDMEYGRW LDEHQRLIND LRSAVNSHMG DNELCILVGG VMAHYDEVFR LKSIGAKADV  300
FHMLSGMWKT PAERCFMWLG GFRSSELLKI LGNHLEPLTD QQLMGICNLQ QSSQQAEDAL  360
SQGMEALQQS LVDTLSSASL GPSASGNVAD YMGQMAIAMG KLATLENFLH QADLLRQQTL  420
QQMHRILTTR QAARALLVFS DYTSRLRALS SLWLARPRN*
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in the apical meristem, the floral meristem, each whorl of organ primordia, and in ovule primordia during wild-type flower development. {ECO:0000269|PubMed:9990857}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in the determination of floral organ number. Acts to determine floral organ patterning by establishing floral organ primordia in specific numbers and positions. Plays a role in regulating stem cell fate by directly controlling AG expression. Binds to the 5'-AAGAAT-3' cis-acting element found in AG promoter. Might represent a target for a post-translational modification by GRXC7/ROXY1. {ECO:0000269|PubMed:19395638, ECO:0000269|PubMed:19395639, ECO:0000269|PubMed:9990857}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012438631.10.0PREDICTED: transcription factor HBP-1b(c38)-like
SwissprotQ9SX270.0PAN_ARATH; Transcription factor PERIANTHIA
TrEMBLA0A0D2T8B50.0A0A0D2T8B5_GOSRA; Uncharacterized protein
STRINGGorai.008G185000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66728133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68640.11e-145bZIP family protein
Publications ? help Back to Top
  1. Maier AT,Stehling-Sun S,Offenburger SL,Lohmann JU
    The bZIP Transcription Factor PERIANTHIA: A Multifunctional Hub for Meristem Control.
    Front Plant Sci, 2011. 2: p. 79
    [PMID:22645551]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  3. Chandler JW,Werr W
    Arabidopsis floral phytomer development: auxin response relative to biphasic modes of organ initiation.
    J. Exp. Bot., 2014. 65(12): p. 3097-110
    [PMID:24744428]
  4. Wynn AN,Seaman AA,Jones AL,Franks RG
    Novel functional roles for PERIANTHIA and SEUSS during floral organ identity specification, floral meristem termination, and gynoecial development.
    Front Plant Sci, 2014. 5: p. 130
    [PMID:24778638]
  5. Gutsche N,Zachgo S
    The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding.
    PLoS ONE, 2016. 11(4): p. e0153810
    [PMID:27128442]
  6. de Luis Balaguer MA, et al.
    Predicting gene regulatory networks by combining spatial and temporal gene expression data in Arabidopsis root stem cells.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(36): p. E7632-E7640
    [PMID:28827319]