PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Thecc1EG023491t3 | ||||||||
Common Name | TCM_023491 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
|
||||||||
Family | bZIP | ||||||||
Protein Properties | Length: 332aa MW: 37113.6 Da PI: 9.4238 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 30.9 | 5.9e-10 | 45 | 86 | 4 | 45 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 k rr+++NReAAr+sR+RKka++++Le +L++ ++L Thecc1EG023491t3 45 QKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQEL 86 6889*************************9777777666555 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 9.3E-8 | 37 | 89 | No hit | No description |
SMART | SM00338 | 4.6E-9 | 42 | 105 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.415 | 44 | 88 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 4.9E-7 | 46 | 86 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 4.38E-7 | 46 | 89 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 49 | 64 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF14144 | 4.1E-32 | 128 | 203 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 332 aa Download sequence Send to blast |
MADASPRTDT STDDTDEKNQ RFERGQTNAI VASDSSDRSK DKTDQKTLRR LAQNREAARK 60 SRLRKKAYVQ QLESSRLKLT QLEQELQRAR QQGIFISSSG DQSHSMSGNG ALAFDVEYAR 120 WLEEHNRQIN ELRAAVNSHA GDTELRTIVD NVTAHFDDIF RLKGIAAKAD VFHVLSGMWK 180 TPAERCFLWI GGFRSSELLK LLANQLEPLT EQQFMGIHNL QQSSQQAEDA LSQGMEALQQ 240 SLAETLTNGS PGPSGSSGNV ANYMGQMAMA MGKLGTLEGF VRQADNLRQQ TLQQMHRILT 300 TRQSARALLA INDYFSRLRA LSSLWLARPR E* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_007028138.1 | 0.0 | PREDICTED: transcription factor HBP-1b(c1) isoform X3 | ||||
Refseq | XP_017977404.1 | 0.0 | PREDICTED: transcription factor HBP-1b(c38) isoform X1 | ||||
Swissprot | Q41558 | 0.0 | HBP1C_WHEAT; Transcription factor HBP-1b(c1) (Fragment) | ||||
TrEMBL | A0A061EVG7 | 0.0 | A0A061EVG7_THECC; Transcription factor HBP-1b(C1) isoform 3 | ||||
STRING | EOY08643 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM667 | 28 | 133 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G06950.4 | 1e-139 | bZIP family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Thecc1EG023491t3 |
Entrez Gene | 18598520 |
Publications ? help Back to Top | |||
---|---|---|---|
|