PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.013G004400.1
Common NameB456_013G004400, LOC105782693
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bZIP
Protein Properties Length: 417aa    MW: 46088.6 Da    PI: 7.3047
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.013G004400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_130.48.5e-10131171545
                         CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 
                         k  rr+++NReAAr+sR+RKka++++Le    +L++  ++L
  Gorai.013G004400.1 131 KILRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQEL 171
                         6679************************9777777666555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1708.7E-8126171No hitNo description
SMARTSM003381.1E-7127190IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.289129173IPR004827Basic-leucine zipper domain
CDDcd147084.22E-22131183No hitNo description
SuperFamilySSF579597.5E-7131174No hitNo description
PfamPF001708.6E-7131171IPR004827Basic-leucine zipper domain
PROSITE patternPS000360134149IPR004827Basic-leucine zipper domain
PfamPF141446.2E-33213288IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MANLYLGFTC GNADSAFNSA KASGQPFPTD RSYIGTLDKT PNSFTINPSA LRVESQGLHL  60
ERGQQTGPVS ISRGHTENWG ESDMADASPR TDISTDAETD EKNLRFDSEK LNAAVAASDS  120
SDRSKSNLDQ KILRRLAQNR EAARKSRLRK KAYVQQLESS RLKLTQLEQE LQRARQQGIF  180
ISSSGDQSHS LGGNGAMTFD VEYGRWLEEH NRQINELRMA VNSHAGDAEL RIIVDGVMAH  240
YDEIFRLKSN VAKADVFHLL SGMWKTPAER CFLWLGGFRS SELLKLLVNQ LEPLTEQQLV  300
GVSNLQQSSQ QAEDALSQGM EALQQSLSET LSTGSLGSSG STGNVANYMG QMAMAMGKLG  360
TLEGFICQAD NLRQQTLQQM HRILTTRQSA RALLAIHDYF SRLRALSSLW LARPRE*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012463061.10.0PREDICTED: transcription factor TGA2-like isoform X1
RefseqXP_012463062.10.0PREDICTED: transcription factor TGA2-like isoform X1
RefseqXP_012463063.10.0PREDICTED: transcription factor TGA2-like isoform X1
RefseqXP_012463064.10.0PREDICTED: transcription factor TGA2-like isoform X1
RefseqXP_012463065.10.0PREDICTED: transcription factor TGA2-like isoform X1
SwissprotQ6IVC20.0TGAL1_ORYSJ; Transcription factor TGAL1
TrEMBLA0A0D2W1G40.0A0A0D2W1G4_GOSRA; Uncharacterized protein
STRINGGorai.013G004400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66728133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12250.21e-154TGACG motif-binding factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  3. Chern M, et al.
    Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins.
    BMC Genomics, 2014. 15: p. 461
    [PMID:24919709]