PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013590283.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bZIP | ||||||||
Protein Properties | Length: 443aa MW: 49871 Da PI: 6.0246 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 31.1 | 5.3e-10 | 157 | 196 | 5 | 41 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLee...kvkeLeae 41 + rr+++NReAAr+sR+RKka++++Le+ + ++Le+e XP_013590283.1 157 QTLRRLAQNREAARKSRLRKKAYVQQLENsriRLAQLEEE 196 5679***********************9833345555554 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 5.9E-6 | 153 | 224 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 8.956 | 155 | 199 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 7.1E-7 | 157 | 196 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 2.81E-6 | 159 | 200 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 2.3E-7 | 160 | 196 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 160 | 175 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF14144 | 2.6E-27 | 242 | 315 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009909 | Biological Process | regulation of flower development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 443 aa Download sequence Send to blast |
MQSSFKTVPF NPDFYSQASF FFRGDSCLDE FHQPINGFHH DEAVGLSPNV TVAASNNLHY 60 TTFDTVMDYG MRERLEGEDE CLDTGELMYQ RGTRLVGGGG GEVNSSLDKW CDSVSAMADN 120 SQHTDTSTDI DTDDKSQLNG VNQGMLLATN CSDQSKQTLR RLAQNREAAR KSRLRKKAYV 180 QQLENSRIRL AQLEEELKRA RQQGCSSERG VSRENTHVAA GNGVFSFELE YARWMEEHQR 240 LINDLRAGVH SQLGDNELRV LVDAVMSHYD EIFRLKGIGT KVDVFHMLSG MWQTPAERFF 300 MWLGGFRSSE LLKILGNHVD PLTDQQLIGI CNLQQSSQQA EDALSQGMEA LQQSLLETLS 360 SASMGPNSSA NVADYMGHMA MAMGKLGTLE NFLRQADLLR QQTLQQLHRI LTTRQAARAF 420 LVIHDYICRL RALSSLWLAR PRD |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in the apical meristem, the floral meristem, each whorl of organ primordia, and in ovule primordia during wild-type flower development. {ECO:0000269|PubMed:9990857}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator involved in the determination of floral organ number. Acts to determine floral organ patterning by establishing floral organ primordia in specific numbers and positions. Plays a role in regulating stem cell fate by directly controlling AG expression. Binds to the 5'-AAGAAT-3' cis-acting element found in AG promoter. Might represent a target for a post-translational modification by GRXC7/ROXY1. {ECO:0000269|PubMed:19395638, ECO:0000269|PubMed:19395639, ECO:0000269|PubMed:9990857}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013590283.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK118286 | 0.0 | AK118286.1 Arabidopsis thaliana At1g68640 mRNA for putative bZip transcription factor PERIANTHIA (PAN) / AtbZip46, complete cds, clone: RAFL19-57-M21. | |||
GenBank | BT008586 | 0.0 | BT008586.1 Arabidopsis thaliana clone U50929 putative bZIP transcription factor, PERIANTHIA (At1g68640) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013590283.1 | 0.0 | PREDICTED: transcription factor PERIANTHIA isoform X1 | ||||
Swissprot | Q9SX27 | 0.0 | PAN_ARATH; Transcription factor PERIANTHIA | ||||
TrEMBL | A0A0D3CZ13 | 0.0 | A0A0D3CZ13_BRAOL; Uncharacterized protein | ||||
STRING | Bo6g107140.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM667 | 28 | 133 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68640.1 | 0.0 | bZIP family protein |