PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG023492t1

Common Name

TCM_023492

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

bZIP

Protein Properties

Length: 466aa MW: 51215.3 Da PI: 9.3077

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG023492t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	30.3	9.3e-10	179	220	4	45
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 k rr+++NReAAr+sR+RKka++++Le +L++ ++L Thecc1EG023492t1 179 QKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQEL 220 6889*************************9777777666555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	6.8E-8	171	223	No hit	No description
SMART	SM00338	4.6E-9	176	239	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.415	178	222	IPR004827	Basic-leucine zipper domain
CDD	cd14708	1.79E-22	180	232	No hit	No description
SuperFamily	SSF57959	6.88E-7	180	223	No hit	No description
Pfam	PF00170	7.8E-7	180	220	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	183	198	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	1.2E-31	262	337	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009410	Biological Process	response to xenobiotic stimulus
GO:0009627	Biological Process	systemic acquired resistance
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 466 aa Download sequence Send to blast
MGSRTVNIGI GNDKKAVTAM PSYVPSVPTS NPSSTEANTI RSSRIPDLGT LEQSLGFRIE 60 DAVDLTRNPL FNQIKSSTQA IADAQFGAIN KTLASADNNL SAAIVGSQTL TLKKDTPPNL 120 VSISAGRENW GDSNMADASP RTDISTDDTD EKNQRFERGQ TNAIVASDSS DRSKDKTDQK 180 TLRRLAQNRE AARKSRLRKK AYVQQLESSR LKLTQLEQEL QRARQQGIFI SSSGDQSHSM 240 SGNGALAFDV EYARWLEEHN RQINELRAAV NSHAGDTELR TIVDNVTAHF DDIFRLKGIA 300 AKADVFHILS GMWKTPAERC FLWIGGFRSS ELLKLLANQL EPLTEQQFMG FHNLQQSSQQ 360 AEDALSQGME ALQQSLAETL ANGSPGPSGS SGNVANYMGQ MAMAMGKLGT LEGFVRQADN 420 LRQQTLQQMH RILTTRQSAR ALLAINDYFS RLRALSSLWL ARPRE*

Sequence ? help Back to Top

Protein Sequence Length: 466 aa Download sequence Send to blast

MGSRTVNIGI GNDKKAVTAM PSYVPSVPTS NPSSTEANTI RSSRIPDLGT LEQSLGFRIE  60
DAVDLTRNPL FNQIKSSTQA IADAQFGAIN KTLASADNNL SAAIVGSQTL TLKKDTPPNL  120
VSISAGRENW GDSNMADASP RTDISTDDTD EKNQRFERGQ TNAIVASDSS DRSKDKTDQK  180
TLRRLAQNRE AARKSRLRKK AYVQQLESSR LKLTQLEQEL QRARQQGIFI SSSGDQSHSM  240
SGNGALAFDV EYARWLEEHN RQINELRAAV NSHAGDTELR TIVDNVTAHF DDIFRLKGIA  300
AKADVFHILS GMWKTPAERC FLWIGGFRSS ELLKLLANQL EPLTEQQFMG FHNLQQSSQQ  360
AEDALSQGME ALQQSLAETL ANGSPGPSGS SGNVANYMGQ MAMAMGKLGT LEGFVRQADN  420
LRQQTLQQMH RILTTRQSAR ALLAINDYFS RLRALSSLWL ARPRE*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00349	DAP	Transfer from AT3G12250	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017977271.1	0.0	PREDICTED: transcription factor HBP-1b(c38) isoform X2
Swissprot	O24160	0.0	TGA21_TOBAC; TGACG-sequence-specific DNA-binding protein TGA-2.1
TrEMBL	A0A061EV20	0.0	A0A061EV20_THECC; TGACG motif-binding factor 6 isoform 1
STRING	EOY08645	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM667	28	133

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12250.2	1e-143	TGACG motif-binding factor 6

Link Out ? help Back to Top
Phytozome	Thecc1EG023492t1
Entrez Gene	18598521

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]