PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00096992001
Common NameGSBRNA2T00096992001, LOC106351867
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bZIP
Protein Properties Length: 335aa    MW: 37122.8 Da    PI: 8.4739
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00096992001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_130.67.5e-105090545
                         CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1  5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45
                         k  rr+++NReAAr+sR+RKka++++Le+   +L++  ++L
  GSBRNA2T00096992001 50 KTLRRLAQNREAARKSRLRKKAYVQQLENSRLKLTQLEQEL 90
                         7889************************9877777766555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.5E-84193No hitNo description
SMARTSM003381.8E-646109IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.4384892IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.7E-75093No hitNo description
PfamPF001707.0E-75090IPR004827Basic-leucine zipper domain
PROSITE patternPS0003605368IPR004827Basic-leucine zipper domain
PfamPF141442.6E-33132207IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MSQLMADTSS RTDVSTDGDT DPRDLGSDRG QTMLAVASDS SGSKDKLDQK TLRRLAQNRE  60
AARKSRLRKK AYVQQLENSR LKLTQLEQEL QRARQQGVFI SSSGDQAHST GGNGALAFDA  120
EHSRWLEEKN RQMNELRSAL NAHAGDAELL IIVDGVMTHY EELFRIKSNA AKNDVFHLLS  180
GMWKTPAERC FLWLGGFRSS ELLKLLANQL EPMTERQVMG LNSLQQTSQQ AEDALSQGME  240
SLQQSLADTL SSGTLGSSSS DNVASYMGQM AMAMGQLGTL EGFIRQADNL RLQTLQQMIR  300
VLTTRQSARA LLAIHDYTSR LRALSSLWLA RPRE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.86500.0seed
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed primarily in roots of young seedlings and later expressed in aging cotyledons, mesophyll cells of hydathodes on leaf margins, vascular tissue and trichomes of senescing rosette leaves. Also detected in young lateral roots and in mature pollen grains.
UniprotTISSUE SPECIFICITY: Expressed predominantly in roots and flowers.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00096992001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ3205400.0AJ320540.1 Arabidopsis thaliana mRNA for transcription factor TGA6 (AtbZIP45 gene).
GenBankBT0295150.0BT029515.1 Arabidopsis thaliana At3g12250 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009120759.10.0PREDICTED: transcription factor TGA6-like isoform X1
RefseqXP_013647045.10.0transcription factor TGA6 isoform X1
SwissprotQ391400.0TGA6_ARATH; Transcription factor TGA6
TrEMBLA0A078IKY70.0A0A078IKY7_BRANA; BnaA01g30760D protein
TrEMBLA0A3N6PZ580.0A0A3N6PZ58_BRACR; Uncharacterized protein
TrEMBLM4FC890.0M4FC89_BRARP; Uncharacterized protein
STRINGBra038705.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66728133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12250.20.0TGACG motif-binding factor 6
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]