PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.013G081100.1

Common Name

B456_013G081100, LOC105784248

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bZIP

Protein Properties

Length: 438aa MW: 48339.3 Da PI: 6.6549

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.013G081100.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	32.3	2.2e-10	151	192	5	46
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLk 46 k rr+++NReAAr+sR+RKka++++Le L++ ++L+ Gorai.013G081100.1 151 KTLRRLAQNREAARKSRLRKKAYVQQLESSQLRLTQLEQELQ 192 788*************************98777777766665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.1E-7	147	218	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.358	149	193	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.81E-7	151	195	No hit	No description
CDD	cd14708	5.17E-23	151	203	No hit	No description
Pfam	PF00170	4.9E-7	151	193	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	7.7E-8	152	196	No hit	No description
PROSITE pattern	PS00036	0	154	169	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	8.0E-29	236	309	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 438 aa Download sequence Send to blast
MQSFKAAAPH TTPDMFCHSS FFLRGDDDFN PANAFHHDDS VDLSSSSIFS LKSSNVDVVG 60 NSLHYDAFST GIRAAEIVSS GTGCLDTGQF MYQKGTTLGN GHIENWGDSG LADNSQQTDT 120 STDVDTDDKN QLQHGAIITV DQSKLKTGDQ KTLRRLAQNR EAARKSRLRK KAYVQQLESS 180 QLRLTQLEQE LQKARQQGFF IASGLSGGHG LSVSGNAALA FDMDYAHWLN EHQRLINDLR 240 SGLNSHLGDS ELRILVESVM AHYDEVFKLK SIGVKADAFH MLSGMWKTPA ERCFMWLGGF 300 RSSELLKILG NHLEPLTDQQ LMGICNLQQS SQQAEDALSQ GMEALQQALV DTLPSACLGP 360 TACGNVADYM SQMAIAMSKL ATLENFLHQA DLLRHQTLQQ MHRILTTRQA ARALLVFSDY 420 NSRLRALSSL WLARPRN*

Sequence ? help Back to Top

Protein Sequence Length: 438 aa Download sequence Send to blast

MQSFKAAAPH TTPDMFCHSS FFLRGDDDFN PANAFHHDDS VDLSSSSIFS LKSSNVDVVG  60
NSLHYDAFST GIRAAEIVSS GTGCLDTGQF MYQKGTTLGN GHIENWGDSG LADNSQQTDT  120
STDVDTDDKN QLQHGAIITV DQSKLKTGDQ KTLRRLAQNR EAARKSRLRK KAYVQQLESS  180
QLRLTQLEQE LQKARQQGFF IASGLSGGHG LSVSGNAALA FDMDYAHWLN EHQRLINDLR  240
SGLNSHLGDS ELRILVESVM AHYDEVFKLK SIGVKADAFH MLSGMWKTPA ERCFMWLGGF  300
RSSELLKILG NHLEPLTDQQ LMGICNLQQS SQQAEDALSQ GMEALQQALV DTLPSACLGP  360
TACGNVADYM SQMAIAMSKL ATLENFLHQA DLLRHQTLQQ MHRILTTRQA ARALLVFSDY  420
NSRLRALSSL WLARPRN*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed in the apical meristem, the floral meristem, each whorl of organ primordia, and in ovule primordia during wild-type flower development. {ECO:0000269\|PubMed:9990857}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator involved in the determination of floral organ number. Acts to determine floral organ patterning by establishing floral organ primordia in specific numbers and positions. Plays a role in regulating stem cell fate by directly controlling AG expression. Binds to the 5'-AAGAAT-3' cis-acting element found in AG promoter. Might represent a target for a post-translational modification by GRXC7/ROXY1. {ECO:0000269\|PubMed:19395638, ECO:0000269\|PubMed:19395639, ECO:0000269\|PubMed:9990857}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012465526.1	0.0	PREDICTED: transcription factor HBP-1b(c38)-like isoform X5
Swissprot	Q9SX27	1e-178	PAN_ARATH; Transcription factor PERIANTHIA
TrEMBL	A0A0D2SAK1	0.0	A0A0D2SAK1_GOSRA; Uncharacterized protein
STRING	Gorai.013G081100.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM667	28	133

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68640.1	1e-144	bZIP family protein

Link Out ? help Back to Top
Phytozome	Gorai.013G081100.1
Entrez Gene	105784248

Publications ? help Back to Top
Maier AT,Stehling-Sun S,Offenburger SL,Lohmann JU The bZIP Transcription Factor PERIANTHIA: A Multifunctional Hub for Meristem Control. Front Plant Sci, 2011. 2: p. 79 [PMID:22645551] Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Chandler JW,Werr W Arabidopsis floral phytomer development: auxin response relative to biphasic modes of organ initiation. J. Exp. Bot., 2014. 65(12): p. 3097-110 [PMID:24744428] Wynn AN,Seaman AA,Jones AL,Franks RG Novel functional roles for PERIANTHIA and SEUSS during floral organ identity specification, floral meristem termination, and gynoecial development. Front Plant Sci, 2014. 5: p. 130 [PMID:24778638] Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] de Luis Balaguer MA, et al. Predicting gene regulatory networks by combining spatial and temporal gene expression data in Arabidopsis root stem cells. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(36): p. E7632-E7640 [PMID:28827319]