PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_20511_BGI-A2_v1.0
Common NameF383_22932
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bZIP
Protein Properties Length: 333aa    MW: 37202.9 Da    PI: 8.2444
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_20511_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_130.86.2e-104888545
                                CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                      bZIP_1  5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45
                                k  rr+++NReAAr+sR+RKka++++Le    +L++  ++L
  Cotton_A_20511_BGI-A2_v1.0 48 KILRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQEL 88
                                6679************************9777777666555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.1E-744107IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.2894690IPR004827Basic-leucine zipper domain
PfamPF001706.3E-74888IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.63E-74891No hitNo description
Gene3DG3DSA:1.20.5.1709.8E-85093No hitNo description
PROSITE patternPS0003605166IPR004827Basic-leucine zipper domain
PfamPF141444.3E-33130205IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009410Biological Processresponse to xenobiotic stimulus
GO:0009627Biological Processsystemic acquired resistance
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MADASPRTDI STDAETDEKN LRFDSEKVNA AVAASDSSDR SKSNLDQKIL RRLAQNREAA  60
RKSRLRKKAY VQQLESSRLK LTQLEQELQR ARQQGIFISS SGDQSHSLGG NGAMTFDVEY  120
GRWLEEHNRQ INELRMAVNS HAGDAELRII VDGVMAHYDE IFRLKSNVAK ADVFHLLSGM  180
WKTPAERCFL WLGGFRSSEL LKLLVNQLEP LTEQQLVGVS NLQQSSQQAE DALSQGMEAL  240
QQSLAETLST GSLGSSSSTG NVANYMGQMA MAMGKLGTLE GFICQADNLR QQTLQQMHRI  300
LTTRQSARAL LAIHDYFSRL RALSSLWLAR PRE
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00349DAPTransfer from AT3G12250Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012463066.10.0PREDICTED: transcription factor TGA2-like isoform X2
RefseqXP_012463067.10.0PREDICTED: transcription factor TGA2-like isoform X2
RefseqXP_012463068.10.0PREDICTED: transcription factor TGA2-like isoform X2
SwissprotQ415580.0HBP1C_WHEAT; Transcription factor HBP-1b(c1) (Fragment)
TrEMBLA0A0B0MPX20.0A0A0B0MPX2_GOSAR; Uncharacterized protein
TrEMBLA0A2P5XGG00.0A0A2P5XGG0_GOSBA; Uncharacterized protein
STRINGGorai.013G004400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66728133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12250.21e-155TGACG motif-binding factor 6