PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_25373_f_2
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family bZIP
Protein Properties Length: 344aa    MW: 38588.5 Da    PI: 9.8035
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_25373_f_2genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_130.57.6e-104687445
                    XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1  4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45
                     k  rr+++NReAAr+sR+RKka++++Le    +L++  ++L
  Neem_25373_f_2 46 QKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQEL 87
                    5888*************************9777777666555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.1E-73790No hitNo description
SMARTSM003385.8E-843106IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.4154589IPR004827Basic-leucine zipper domain
PfamPF001706.0E-74787IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.69E-74790No hitNo description
PROSITE patternPS0003605065IPR004827Basic-leucine zipper domain
PfamPF141445.2E-33129203IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009410Biological Processresponse to xenobiotic stimulus
GO:0009627Biological Processsystemic acquired resistance
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MADASPRTDI STDADTDDKN QRFDRGQSTA VVASDSSDRS KDKMDQKTLR RLAQNREAAR  60
KSRLRKKAYV QQLESSRLKL TQLEQELQRA RQQGIFISSS GDQAHSMSGN GAMAFDVEYA  120
RWLEEHNRQI NELRSAVNSH ASDTELRMIV DGIMAHYDEI FKLKANAAKA DVFHLLSGMW  180
KTPAERCFLW LGGFRSSELL KVVWKQLMNA SHRLLVNQLE PLTEQQLVGI GNLQQSSQQA  240
EDALSQGMEA LQQSLAETLS SGSLGSSGSS GNVANYMGQM AMAMGKLGTL EGFIRQADNL  300
RQQTLQQMHR ILTTRQSARA LLAIHDYFSR LRALSSLWLA RPRE
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00349DAPTransfer from AT3G12250Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027354195.10.0transcription factor TGA2.2-like isoform X2
RefseqXP_027354196.10.0transcription factor TGA2.2-like isoform X2
SwissprotQ415580.0HBP1C_WHEAT; Transcription factor HBP-1b(c1) (Fragment)
TrEMBLA0A067KWK50.0A0A067KWK5_JATCU; Uncharacterized protein
STRINGXP_006465757.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66728133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12250.21e-156TGACG motif-binding factor 6