PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG011845t1

Common Name

TCM_011845

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

bZIP

Protein Properties

Length: 463aa MW: 50732.7 Da PI: 5.9555

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG011845t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	31.1	5.1e-10	174	212	5	43
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNk 43 k rr+++NReAAr+sR+RKka++++Le+ L++ + Thecc1EG011845t1 174 KTLRRLAQNREAARKSRLRKKAYVQQLENSRLRLTQLEQ 212 788*************************97666655554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	1.0E-7	167	217	No hit	No description
SMART	SM00338	4.7E-9	170	241	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.415	172	216	IPR004827	Basic-leucine zipper domain
Pfam	PF07716	9.8E-7	172	216	IPR004827	Basic-leucine zipper domain
CDD	cd14708	2.17E-25	174	226	No hit	No description
SuperFamily	SSF57959	9.64E-7	174	217	No hit	No description
PROSITE pattern	PS00036	0	177	192	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	1.4E-31	259	332	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009909	Biological Process	regulation of flower development
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 463 aa Download sequence Send to blast
MQSFKAAAPT NPDMFCHTSF FLRGEDCNSR HQTRFSDLGE LDHPASAFQH DDAVDLSPSS 60 IFSLKSSNVA VVANSFNYGS LNTSIGATEI VSSGTGCLDT GQFMYQKGTT FGASLGNGHI 120 ENWADSGLAD NSQQTDTSTD VDNDDKNQLN GVRHGAIITV DSVDESKPKT GDQKTLRRLA 180 QNREAARKSR LRKKAYVQQL ENSRLRLTQL EQELQRARQQ GIFISSGLSG DHGHSVAGNG 240 ALAFDMDYAH WLDDHQRLIN DLRSAVNSHM GDNELRILVE GVMAHYDEVF RLKSIGAKAD 300 VFHMLSGMWK TPAERCFMWL GGFRSSELLK ILGNHLEPLT DQQLMGICNL QQSSQQAEDA 360 LSQGMEALQQ SLVDTLSSAC LGPAGSGNVA DYMGQMAIAM GKLATLENFL HQADLLRQQT 420 LQQMHRILTT RQAARALLVI SDYTSRLRAL SSLWCLEGDG EA*

Sequence ? help Back to Top

Protein Sequence Length: 463 aa Download sequence Send to blast

MQSFKAAAPT NPDMFCHTSF FLRGEDCNSR HQTRFSDLGE LDHPASAFQH DDAVDLSPSS  60
IFSLKSSNVA VVANSFNYGS LNTSIGATEI VSSGTGCLDT GQFMYQKGTT FGASLGNGHI  120
ENWADSGLAD NSQQTDTSTD VDNDDKNQLN GVRHGAIITV DSVDESKPKT GDQKTLRRLA  180
QNREAARKSR LRKKAYVQQL ENSRLRLTQL EQELQRARQQ GIFISSGLSG DHGHSVAGNG  240
ALAFDMDYAH WLDDHQRLIN DLRSAVNSHM GDNELRILVE GVMAHYDEVF RLKSIGAKAD  300
VFHMLSGMWK TPAERCFMWL GGFRSSELLK ILGNHLEPLT DQQLMGICNL QQSSQQAEDA  360
LSQGMEALQQ SLVDTLSSAC LGPAGSGNVA DYMGQMAIAM GKLATLENFL HQADLLRQQT  420
LQQMHRILTT RQAARALLVI SDYTSRLRAL SSLWCLEGDG EA*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator involved in the determination of floral organ number. Acts to determine floral organ patterning by establishing floral organ primordia in specific numbers and positions. Plays a role in regulating stem cell fate by directly controlling AG expression. Binds to the 5'-AAGAAT-3' cis-acting element found in AG promoter. Might represent a target for a post-translational modification by GRXC7/ROXY1. {ECO:0000269\|PubMed:19395638, ECO:0000269\|PubMed:19395639, ECO:0000269\|PubMed:9990857}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007046280.2	0.0	PREDICTED: transcription factor HBP-1b(c38) isoform X1
Swissprot	Q9SX27	0.0	PAN_ARATH; Transcription factor PERIANTHIA
TrEMBL	A0A061ECH8	0.0	A0A061ECH8_THECC; BZIP transcription factor family protein isoform 1
STRING	EOY02112	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM667	28	133

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68640.1	1e-175	bZIP family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG011845t1
Entrez Gene	18610523

Publications ? help Back to Top
Maier AT,Stehling-Sun S,Offenburger SL,Lohmann JU The bZIP Transcription Factor PERIANTHIA: A Multifunctional Hub for Meristem Control. Front Plant Sci, 2011. 2: p. 79 [PMID:22645551] Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509] Chandler JW,Werr W Arabidopsis floral phytomer development: auxin response relative to biphasic modes of organ initiation. J. Exp. Bot., 2014. 65(12): p. 3097-110 [PMID:24744428] Wynn AN,Seaman AA,Jones AL,Franks RG Novel functional roles for PERIANTHIA and SEUSS during floral organ identity specification, floral meristem termination, and gynoecial development. Front Plant Sci, 2014. 5: p. 130 [PMID:24778638] Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] de Luis Balaguer MA, et al. Predicting gene regulatory networks by combining spatial and temporal gene expression data in Arabidopsis root stem cells. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(36): p. E7632-E7640 [PMID:28827319]