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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
XP_013606547.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
| Family |
bZIP |
| Protein Properties |
Length: 328aa MW: 36460.2 Da PI: 9.3135 |
| Description |
bZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_013606547.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | bZIP_1 | 30.7 | 6.8e-10 | 44 | 84 | 5 | 45 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45
k rr+++NReAAr+sR+RKka++++Le+ +L++ ++L
XP_013606547.1 44 KTVRRLAQNREAARKSRLRKKAYVQQLENSRLKLTQLEQEL 84
7789************************9877777766555 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009410 | Biological Process | response to xenobiotic stimulus |
| GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated |
| GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0005737 | Cellular Component | cytoplasm |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 328 aa
Download sequence Send
to blast |
MADMSPITDV STDGDRDLGS EGALVNNTAA SDSSERSKNK LDQKTVRRLA QNREAARKSR 60
LRKKAYVQQL ENSRLKLTQL EQELQRARQQ GVFISSTGDQ AHSTGGNGAL AFDAEYSRWL 120
EEKNKRMNEL RSALNAHAGD GELLIIVDGV MAHYEELFRI KSNAAKSDVF HLLYGMWKTP 180
AERCFLWLGG FRSSEILKLL VNQLEPMTER QVMGINSLQE TSQQAEDALS QGMESLQQSL 240
ADTLSSGTLG SSSSGNVASY MGQMAMAMGK LGTLEGFIRQ ADNLRLQTLQ QMIRVLTTRQ 300
SARALLAIHD YSSRLRALSS LWLARPRE
|
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Expressed primarily in roots of young seedlings and later expressed in aging cotyledons, mesophyll cells of hydathodes on leaf margins, vascular tissue and trichomes of senescing rosette leaves. Also detected in young lateral roots and in mature pollen grains. |
| Uniprot | TISSUE SPECIFICITY: Expressed predominantly in roots and flowers. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters (By similarity). {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK353125 | 0.0 | AK353125.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-10-O14. |
