PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_14315_BGI-A2_v1.0
Common NameF383_00102
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bZIP
Protein Properties Length: 443aa    MW: 48808.5 Da    PI: 7.2772
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_14315_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_130.48.7e-10157198445
                                 XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                      bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 
                                  k  rr+++NReAAr+sR+RKka++++Le    +L++  ++L
  Cotton_A_14315_BGI-A2_v1.0 157 QKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQEL 198
                                 6889*************************9777777666555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.1E-7148201No hitNo description
SMARTSM003381.2E-9154217IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.415156200IPR004827Basic-leucine zipper domain
CDDcd147081.66E-22158210No hitNo description
SuperFamilySSF579596.88E-7158201No hitNo description
PfamPF001707.3E-7158198IPR004827Basic-leucine zipper domain
PROSITE patternPS000360161176IPR004827Basic-leucine zipper domain
PfamPF141444.7E-32240316IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MPSYVPSVPT SNSSGAEANA IRSSQLPDFG NLDQFRLEDA IDLTRNPLFN QIKSSSQALA  60
DAQFGALSKT LASADNNLSA AVVGSQTLPL QKDNQPNLPH ISVGRENWGD SNMADGSPRT  120
DTSTDDTEEK NQRFGRGQTN AIVASDSSDR SKDKTDQKTL RRLAQNREAA RKSRLRKKAY  180
VQQLESSRLK LTQLEQELQR ARQQGIFISS TGDQSHSMSG NGALAFDVEY SRWLEEHNKH  240
INELRAAVNS HAGDAELRTI VDSVTAHFDD IFRLKGIAAK ADVFHILSGM WKTPAERCFL  300
WIGGFRSSEL LKLLASQLEP LTEQQFMGIQ NLQQSSQQAE DALSQGMEAL QQSLAETLAN  360
GSPAPSGPSG NVANYMGQMA MAMGKLGTLE GFLRQADNLR QQTLQQMHRI LTTRQSARAL  420
LAINDYFSRL RALSSLWLAR PCE
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017631227.10.0PREDICTED: transcription factor HBP-1b(c38)-like
SwissprotO241600.0TGA21_TOBAC; TGACG-sequence-specific DNA-binding protein TGA-2.1
TrEMBLA0A0B0PS040.0A0A0B0PS04_GOSAR; Uncharacterized protein
STRINGGorai.007G352600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66728133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12250.21e-147TGACG motif-binding factor 6