PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00107087001

Common Name

GSBRNA2T00107087001, LOC106446065

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bZIP

Protein Properties

Length: 329aa MW: 36487.2 Da PI: 9.3135

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00107087001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	30.7	6.8e-10	44	84	5	45
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 k rr+++NReAAr+sR+RKka++++Le+ +L++ ++L GSBRNA2T00107087001 44 KTVRRLAQNREAARKSRLRKKAYVQQLENSRLKLTQLEQEL 84 7789************************9877777766555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.5E-7	40	103	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.438	42	86	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	3.8E-8	44	89	No hit	No description
SuperFamily	SSF57959	5.06E-7	44	87	No hit	No description
Pfam	PF00170	6.5E-7	44	84	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	47	62	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	3.8E-32	127	201	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 329 aa Download sequence Send to blast
MADMSPITDV STDGDRDLGS EGALVNNTAA SDSSERSKNK LDQKTVRRLA QNREAARKSR 60 LRKKAYVQQL ENSRLKLTQL EQELQRARQQ GVFISSTGDQ AHSTGGNGAL AFDAEYSRWL 120 EEKNKRMNEL RSALNAHAGD GELLIIVDGV MAHYEELFRI KSNAAKNDVF HLLYGMWKTP 180 AERCFLWLGG FRSSEILKLL VNQLEPMTER QVMGINSLQE TSQQAEDALS QGMESLQQSL 240 ADTLSSGTLG SSSSGNVASY MGQMAMAMGK LGTLEGFIRQ ADNLRLQTLQ QMIRVLTTRQ 300 SARALLAIHD YSSRLRALSS LWLARPRE*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.20480	0.0	seed

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed primarily in roots of young seedlings and later expressed in aging cotyledons, mesophyll cells of hydathodes on leaf margins, vascular tissue and trichomes of senescing rosette leaves. Also detected in young lateral roots and in mature pollen grains.
Uniprot	TISSUE SPECIFICITY: Expressed predominantly in roots and flowers.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00107087001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK353125	0.0	AK353125.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-10-O14.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013743190.1	0.0	transcription factor TGA2
Refseq	XP_013743191.1	0.0	transcription factor TGA2
Swissprot	Q39140	0.0	TGA6_ARATH; Transcription factor TGA6
TrEMBL	A0A0D3EH76	0.0	A0A0D3EH76_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6EPA2	0.0	A0A3P6EPA2_BRAOL; Uncharacterized protein
STRING	Bo9g175710.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM667	28	133

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12250.2	0.0	TGACG motif-binding factor 6

Link Out ? help Back to Top
Entrez Gene	106446065

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]