PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_24660_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family bZIP
Protein Properties Length: 237aa    MW: 26132.8 Da    PI: 8.935
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_24660_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1331.4e-10110150545
                     CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 
                     k  rr+++NReAAr+sR+RKka++++Le    +L++  ++L
  Neem_24660_f_1 110 KTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQEL 150
                     788*************************9777777666555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1704.4E-899153No hitNo description
SMARTSM003382.7E-9106169IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.415108152IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.38E-7110153No hitNo description
PfamPF001701.1E-7110150IPR004827Basic-leucine zipper domain
PROSITE patternPS000360113128IPR004827Basic-leucine zipper domain
PfamPF141441.6E-9192236IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MKTGSQAMGT DVQFGTLSKT LASSDINLPA AIVGSQALSL QKDPQSNLIS VSSGHRENWG  60
ESNMAEASPR TDTSTDDTED KSQKFERGQS TAVVASDSSD KSKEKSGDQK TLRRLAQNRE  120
AARKSRLRKK AYVQQLESSR LKLTQLEQEL QRARQQGIFI SSSGDQSHSM SGNGAAAFDV  180
EYSRWLEEHN RHINELRAAV NSHAGDTELR TIVDNVTTQF DEIFRLKGIA AKADVFR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006421096.11e-147transcription factor HBP-1b(c38)
RefseqXP_006421097.11e-147transcription factor HBP-1b(c38)
RefseqXP_006477494.11e-147transcription factor HBP-1b(c38)
RefseqXP_024954454.11e-147transcription factor HBP-1b(c38)
SwissprotQ415581e-100HBP1C_WHEAT; Transcription factor HBP-1b(c1) (Fragment)
TrEMBLA0A067DTM51e-147A0A067DTM5_CITSI; Uncharacterized protein
TrEMBLA0A067E0Z91e-145A0A067E0Z9_CITSI; Uncharacterized protein
TrEMBLV4S6821e-145V4S682_9ROSI; Uncharacterized protein
STRINGXP_006477494.11e-146(Citrus sinensis)
STRINGXP_006421095.11e-146(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66728133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12250.51e-51TGACG motif-binding factor 6