PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Phylogenetic Tree for
Castanea mollissima
bHLH FamilyPhylogenetic tree for domain ? help Back to Top |
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Subtree rooted at node 143: /---------------------------------------------- maker-scaffold00038-augustus-gene-0.37-mRNA-1/57-99 (2) | | /----- maker-scaffold11285-snap-gene-0.6-mRNA-1/163-207 (3) | /-100+ | | \----- maker-scaffold04445-augustus-gene-0.11-mRNA-1/168-211 (57) | | | /-100+---------- maker-scaffold11351-snap-gene-0.3-mRNA-1/364-406 (14) | | | |--------------91--------------+ \---------- maker-scaffold07271-snap-gene-0.9-mRNA-1/344-386 (72) | | | \--------------- maker-scaffold06487-snap-gene-0.15-mRNA-1/289-343 (12) | |---------------------------------------------- maker-scaffold01138-snap-gene-0.38-mRNA-1/449-482 (4) | | /----- maker-scaffold01763-augustus-gene-0.32-mRNA-1/128-179 (5) | /-51-+ | | \----- maker-scaffold04193-snap-gene-0.13-mRNA-1/131-182 (28) | /-91-+ | | \---------- maker-scaffold10265-snap-gene-0.9-mRNA-1/124-175 (11) | | | | /----- maker-scaffold00644-augustus-gene-0.49-mRNA-1/207-258 (31) | /--75-+----59---+ | | | \----- maker-scaffold03576-snap-gene-0.15-mRNA-1/97-148 (59) | | | | /------100-----+ \--------------- maker-scaffold03647-augustus-gene-0.25-mRNA-1/194-245 (73) | | | | | \--------------------- maker-scaffold02441-snap-gene-0.18-mRNA-1/103-154 (34) | | | | /----- maker-scaffold00915-snap-gene-0.29-mRNA-1/44-95 (8) | | /-84-+ | | | \----- maker-scaffold00915-augustus-gene-0.28-mRNA-1/44-95 (97) | | /-100+ | | | \---------- maker-scaffold00715-augustus-gene-0.35-mRNA-1/50-101 (80) | | /----100---+ | /-61-+ | \--------------- maker-scaffold00442-snap-gene-1.11-mRNA-1/69-121 (45) | | | | | | | | /----- maker-scaffold11229-augustus-gene-0.6-mRNA-1/68-120 (16) | | | /-86-+ /------100------+ | | | | | | \----- augustus_masked-scaffold06142-abinit-gene-0.0-mRNA-1/71-123 (77) | | | | | | | | | | | | /----- augustus_masked-scaffold03010-abinit-gene-0.0-mRNA-1/19-59 (19) | | | | \-60-+ /-98-+ | | | | | | \----- maker-scaffold02164-snap-gene-0.14-mRNA-1/18-57 (38) | | | | | /-100+ |-53-+ \-100+ | | \---------- maker-scaffold03760-augustus-gene-0.13-mRNA-1/13-53 (53) | | | \--71-+ | | | | /----- maker-scaffold07037-snap-gene-0.9-mRNA-1/9-60 (22) /--88-+ | | \----95---+ | | | | \----- maker-scaffold18485-snap-gene-0.2-mRNA-1/15-63 (58) | | | | | | | | /----- maker-scaffold06761-snap-gene-0.9-mRNA-1/33-77 (40) | | | \-----------100-----------+ | | | \----- maker-scaffold00334-snap-gene-1.25-mRNA-1/97-140 (98) | | | | | \----------------------------------------- augustus_masked-scaffold00099-abinit-gene-1.0-mRNA-1/268-314 (15) | | | |---------------------------------------------- maker-scaffold07473-snap-gene-0.12-mRNA-1/429-475 (9) | | | |---------------------------------------------- maker-scaffold01663-augustus-gene-0.33-mRNA-1/482-528 (13) | | | |---------------------------------------------- maker-scaffold01868-augustus-gene-0.12-mRNA-1/8-43 (20) | | | | /----- maker-scaffold07332-augustus-gene-0.14-mRNA-1/336-380 (25) | | /-99-+ | | | \----- maker-scaffold16924-snap-gene-0.3-mRNA-1/335-379 (42) | |-----------------97----------------+ | | \---------- maker-scaffold00868-augustus-gene-0.31-mRNA-1/91-134 (52) | | | | /---------- maker-scaffold19727-augustus-gene-0.2-mRNA-1/173-216 (30) | | | | |-----------------55----------------+ /----- maker-scaffold04460-augustus-gene-0.17-mRNA-1/40-85 (44) | | \-67-+ | | \----- maker-scaffold00458-snap-gene-0.40-mRNA-1/297-340 (94) | | /-87-+ | /----- maker-scaffold01695-augustus-gene-0.23-mRNA-1/40-63 (35) | | | /-56-+ | | | | \----- maker-scaffold03012-snap-gene-0.27-mRNA-1/50-97 (85) | | |----------------100----------------+ | | | \---------- maker-scaffold00289-augustus-gene-0.31-mRNA-1/80-127 (66) | | | | | | /---------- augustus_masked-scaffold01491-abinit-gene-0.3-mRNA-1/515-560 (47) | | | | | | | /-99-+ /----- augustus_masked-scaffold01291-abinit-gene-0.8-mRNA-1/327-372 (68) | | | | \-96-+ | | | | \----- augustus_masked-scaffold15592-abinit-gene-0.0-mRNA-1/296-341 (96) | | |--------------100-------------+ | | | |--------------- augustus_masked-scaffold01197-abinit-gene-0.14-mRNA-1/361-407 (48) | | | | | | | \--------------- augustus_masked-scaffold00294-abinit-gene-1.10-mRNA-1/442-488 (56) | | | | | | /----- maker-scaffold03116-snap-gene-0.21-mRNA-1/177-223 (69) | | | /-99-+ /-92-+ | | | \----- augustus_masked-scaffold05011-abinit-gene-0.2-mRNA-1/165-212 (88) | | | \----------------100----------------+ | | | \---------- snap_masked-scaffold02766-abinit-gene-0.16-mRNA-1/182-228 (91) | | | | | | /---------- maker-scaffold00859-augustus-gene-0.50-mRNA-1/72-118 (6) | | | | | | | | /----- maker-scaffold02032-augustus-gene-0.12-mRNA-1/68-114 (23) | | | |-91-+ | | | | \----- maker-scaffold11720-augustus-gene-0.4-mRNA-1/132-178 (67) | | \--------------------96-------------------+ | | |---------- augustus_masked-scaffold00059-abinit-gene-0.2-mRNA-1/60-106 (26) | | | | | |---------- maker-scaffold03159-snap-gene-0.20-mRNA-1/85-131 (84) | | | --70-+ | \---------- maker-scaffold07299-augustus-gene-0.21-mRNA-1/71-118 (90) | | | | /----- maker-scaffold00681-snap-gene-0.20-mRNA-1/282-331 (55) | \------------------------100------------------------+ | \----- maker-scaffold04425-augustus-gene-0.12-mRNA-1/15-64 (71) | | /----- snap_masked-scaffold02297-abinit-gene-0.23-mRNA-1/49-95 (17) | /-63-+ | | \----- maker-scaffold04101-snap-gene-0.20-mRNA-1/343-389 (81) | /-86-+ | | \---------- maker-scaffold01436-augustus-gene-0.28-mRNA-1/478-524 (33) | | | | /----- maker-scaffold10205-augustus-gene-0.7-mRNA-1/176-221 (24) \----------------------99----------------------+---100---+ | \----- maker-scaffold07211-snap-gene-0.10-mRNA-1/260-305 (64) | | /----- maker-scaffold10290-snap-gene-0.10-mRNA-1/155-201 (65) \---100---+ \----- maker-scaffold09854-augustus-gene-0.9-mRNA-1/128-173 (76) Root part of tree: /------------------------------------------------------------------- augustus_masked-scaffold00098-abinit-gene-0.10-mRNA-1/299-336 (1) | | /------ maker-scaffold03290-snap-gene-0.24-mRNA-1/211-249 (86) |-----------------------------99-----------------------------+ | \------ maker-scaffold02342-augustus-gene-0.19-mRNA-1/191-229 (87) | | /------------------------------------- (143) | | | | /------------------------ augustus_masked-scaffold00495-abinit-gene-0.6-mRNA-1/379-427 (32) | | | | | | /------ maker-scaffold03962-augustus-gene-0.15-mRNA-1/165-212 (36) | | | /--63-+ | | | | \------ maker-scaffold03443-augustus-gene-0.17-mRNA-1/155-181 (51) | | | /--83-+ | | | | \------------ maker-scaffold03167-augustus-gene-0.16-mRNA-1/194-241 (46) | /--89-+ | | | | | |--50-+------------------ maker-scaffold11782-augustus-gene-0.3-mRNA-1/326-373 (79) | | | /-100-+ | | | | | | \------------------ augustus_masked-scaffold08631-abinit-gene-0.0-mRNA-1/178-225 (95) | | | | | | | | | |------------------------ maker-scaffold02563-augustus-gene-0.16-mRNA-1/273-321 (50) | | | | | | | | | |------------------------ maker-scaffold05644-snap-gene-0.15-mRNA-1/370-417 (54) | | | | | | | \--65--+ |------------------------ maker-scaffold00344-augustus-gene-0.29-mRNA-1/249-296 (82) | | | | | /--57-+ | \------------------------ maker-scaffold05038-snap-gene-0.15-mRNA-1/165-187 (89) | | | | | | | | /------------ maker-scaffold12866-augustus-gene-0.2-mRNA-1/268-313 (41) | | | | | | | | \--------76-------+ /------ maker-scaffold00256-snap-gene-1.21-mRNA-1/199-243 (74) + | | \--99-+ | | | \------ maker-scaffold11803-augustus-gene-0.7-mRNA-1/199-243 (93) | | | | | | /------------------ maker-scaffold02381-snap-gene-0.26-mRNA-1/214-259 (7) | | | | | | | | /------------ maker-scaffold09972-augustus-gene-0.4-mRNA-1/343-388 (21) | | \-----------100----------+ | | | | |------------ maker-scaffold13555-augustus-gene-0.6-mRNA-1/323-368 (29) | | \-100-+ | | | /------ maker-scaffold00270-augustus-gene-0.24-mRNA-1/397-436 (70) | | \--99-+ | | \------ maker-scaffold06320-augustus-gene-0.9-mRNA-1/347-392 (83) | /--99-+ | | | /------------ augustus_masked-scaffold00662-abinit-gene-0.3-mRNA-1/169-209 (27) | | | | | | | /--89-+ /------ snap_masked-scaffold02634-abinit-gene-0.17-mRNA-1/57-97 (60) | | | | \--93-+ | | | | \------ augustus_masked-scaffold07645-abinit-gene-0.4-mRNA-1/153-193 (62) | | | | | | | | /------ augustus_masked-scaffold01414-abinit-gene-0.4-mRNA-1/172-216 (43) | | | /--72-+----100----+ | | | | | \------ maker-scaffold08166-snap-gene-0.12-mRNA-1/58-102 (78) | /--78-+ | | | | | | | | |------------------ augustus_masked-scaffold03749-abinit-gene-0.0-mRNA-1/374-414 (61) | | | |-----------68-----------+ | | | | | | \------------------ augustus_masked-scaffold09356-abinit-gene-0.1-mRNA-1/47-87 (63) | | | | | | | | | \------------------------ maker-scaffold02855-augustus-gene-0.11-mRNA-1/245-288 (75) | | | | | | | \------------------------------------------------- maker-scaffold02169-augustus-gene-0.32-mRNA-1/581-618 (49) | | | \--72-+ \------------------------------------------------------- maker-scaffold01323-snap-gene-0.39-mRNA-1/317-339 (18) | |------------------------------------------------------------- maker-scaffold00019-augustus-gene-1.39-mRNA-1/411-443 (10) | | /------ maker-scaffold02360-snap-gene-0.37-mRNA-1/47-94 (37) |--------------------------68--------------------------+ | \------ maker-scaffold04780-augustus-gene-0.27-mRNA-1/183-221 (39) | \------------------------------------------------------------- maker-scaffold04418-augustus-gene-0.7-mRNA-1/364-401 (92) |