PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

maker-scaffold11229-augustus-gene-0.6-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

bHLH

Protein Properties

Length: 403aa MW: 45209.7 Da PI: 6.9298

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
maker-scaffold11229-augustus-gene-0.6-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.1	1.3e-12	68	120	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 r+++h +Er+RR+++N+ Lr+llP ++K s ++ +Av+YI++Lq maker-scaffold11229-augustus-gene-0.6-mRNA-1 68 RKVMHRDMERNRRKEMNNLHGSLRSLLPLeY---IKGKRSISDHMNEAVNYINHLQ 120 7899***********************77...*******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	4.97E-11	65	124	No hit	No description
SuperFamily	SSF47459	9.42E-14	66	135	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	13.891	67	119	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.2E-11	68	137	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	7.4E-10	68	120	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.0E-4	73	125	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 403 aa Download sequence Send to blast
MFSSDQNDEK VFQIFTTAYQ HHTVPQELIL PDALMDDSTH NNDKGKGRLE KSLAALDSCE 60 ITHEDNDRKV MHRDMERNRR KEMNNLHGSL RSLLPLEYIK GKRSISDHMN EAVNYINHLQ 120 ENIKQLGAKR DELKKLSDLI ALEPESGTSA LCLPTFVMVR QCLDGVEITV NSSFMEQGLP 180 LSRVLQILLE EGLAVVGCVS TKVNQRLIYT IQSQGRGNAK AGKGDQLSSH KVKMATGKAV 240 HCINVGFGKV SMRALELKHR CNPQFEGKRS VSDLINEAAN YIKHMTEKIQ GLQVERDQLK 300 NPSNSTAFIP GIESSNNCSL NYVTVRVSEA GIEILMSSWL REEGFLLSKV LELLLEEGLS 360 VIRCASNKTN ERLFLTIQSE VCDPTCFNLS ELQQKLNAMC NYG

Sequence ? help Back to Top

Protein Sequence Length: 403 aa Download sequence Send to blast

MFSSDQNDEK VFQIFTTAYQ HHTVPQELIL PDALMDDSTH NNDKGKGRLE KSLAALDSCE  60
ITHEDNDRKV MHRDMERNRR KEMNNLHGSL RSLLPLEYIK GKRSISDHMN EAVNYINHLQ  120
ENIKQLGAKR DELKKLSDLI ALEPESGTSA LCLPTFVMVR QCLDGVEITV NSSFMEQGLP  180
LSRVLQILLE EGLAVVGCVS TKVNQRLIYT IQSQGRGNAK AGKGDQLSSH KVKMATGKAV  240
HCINVGFGKV SMRALELKHR CNPQFEGKRS VSDLINEAAN YIKHMTEKIQ GLQVERDQLK  300
NPSNSTAFIP GIESSNNCSL NYVTVRVSEA GIEILMSSWL REEGFLLSKV LELLLEEGLS  360
VIRCASNKTN ERLFLTIQSE VCDPTCFNLS ELQQKLNAMC NYG

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023900290.1	1e-145	transcription factor bHLH118-like
TrEMBL	A0A2N9EN82	1e-100	A0A2N9EN82_FAGSY; Uncharacterized protein
STRING	cassava4.1_015229m	2e-58	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF792	33	125

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51780.1	5e-37	bHLH family protein