PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold02855-augustus-gene-0.11-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family bHLH
Protein Properties Length: 332aa    MW: 37122.2 Da    PI: 6.0076
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold02855-augustus-gene-0.11-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.71.1e-09245288755
                                                    HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                                            HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                                    ++ ++RR+ri +++  L++l+P+       K++ +++LekA+ Y+k Lq
  maker-scaffold02855-augustus-gene-0.11-mRNA-1 245 IAAKNRRERISERLKVLQDLVPNG-----SKVDLVTMLEKAISYVKFLQ 288
                                                    5679*******************5.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.0E-12237295IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.485238287IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.28E-12238292No hitNo description
SuperFamilySSF474591.57E-13240297IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.1E-12244293IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.8E-7246288IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MALAKDRMLH DSCMGSVHQL VPDLSSPGPN YAVDDDECNK VALQEVAGLE SNGFVKNVGM  60
NSNAFVFRPT HYQPAHEEAH SLINFKNGYG NGNFMHSSCE SLLSFEQSGR SSQNSFLKTN  120
NQKEEYSMWE ENFSDQGYQR NEISSKCSGE PRLLAEFNCF QTASNYSSIT NTTTKENQHE  180
DGAYGWLYSE EPVDIDSIQE SGTHETSFHK RPHMGESAQA SKKQFTNANK KPKPKLNSSK  240
DPQSIAAKNR RERISERLKV LQDLVPNGSK VDLVTMLEKA ISYVKFLQLQ VKVLATDEFW  300
PVQGGKAPDI SQVKEAIDAI LCCQRDTDSS SK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023882909.10.0putative transcription factor bHLH086 isoform X1
TrEMBLA0A2I4EB431e-147A0A2I4EB43_JUGRE; putative transcription factor bHLH086
STRINGVIT_14s0006g01470.t011e-119(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49373253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37800.12e-60RHD SIX-LIKE 1