PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold00059-abinit-gene-0.2-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family bHLH
Protein Properties Length: 228aa    MW: 25377.5 Da    PI: 11.0346
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold00059-abinit-gene-0.2-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH391.5e-1260106354
                                                           HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                                                   HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                                           ++h+e+ErrRR riN  +++Lr++lP++      K++Ka++L ++v+ +++L
  augustus_masked-scaffold00059-abinit-gene-0.2-mRNA-1  60 KKHSEAERRRRMRINGQYATLRDILPNL-----VKMDKATVLAETVRRVREL 106
                                                           68*************************9.....7************999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.96E-1349115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.74857106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.2E-1060106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.07E-960111No hitNo description
Gene3DG3DSA:4.10.280.103.2E-1361114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.1E-1063112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550217.08E-9146215No hitNo description
Gene3DG3DSA:3.30.70.2603.6E-8148197No hitNo description
PROSITE profilePS516718.864148224IPR002912ACT domain
CDDcd048733.10E-7149213No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0005739Cellular Componentmitochondrion
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MVLLRQLERD MQQFQRYYKS GTCTIQNRFP QGVTSTNTIS HKYSFSKPKS KAEAKQVAAK  60
KHSEAERRRR MRINGQYATL RDILPNLVKM DKATVLAETV RRVRELRKTV SDLEGVCGGS  120
SKDCVFPGGA DKLSLENGVG DDDKGLVKVT FSCEDRPGLI SAVARTLRSM KGRVVKFEMV  180
TLGGRTKSVL WVQGLSGGNE VIGMLRRALK VVIDRPSFPG ISKRSRLG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023873779.11e-154transcription factor bHLH131-like
TrEMBLA0A2N9EPK31e-136A0A2N9EPK3_FAGSY; Uncharacterized protein
STRINGXP_008235541.14e-83(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF126113032
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38070.12e-48bHLH family protein