PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold07332-augustus-gene-0.14-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family bHLH
Protein Properties Length: 512aa    MW: 58641.5 Da    PI: 8.2031
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold07332-augustus-gene-0.14-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.15.5e-12336380554
                                                    HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                                            HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                                    h + Er+RR+++N++f+ Lr+llP+      +K +Ka+ L  + eY++sL
  maker-scaffold07332-augustus-gene-0.14-mRNA-1 336 HMISERKRREKLNESFQALRSLLPPG-----TKKDKASLLATTREYLSSL 380
                                                    8899********************97.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.983331380IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.15E-16332397IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.59E-12333385No hitNo description
Gene3DG3DSA:4.10.280.101.4E-14335395IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-9336380IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-13337386IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 512 aa     Download sequence    Send to blast
MDTAFLFDES SRANFFQLIM QSIPYTYICL WSNWPQSSSF LRYLDGFFYE ENNQPSSSSG  60
TQARRLFEEY RQSVFVVENE CVPGLAFKNS RPYLELQEVH LQRFASKEVQ RQFYQVAGIK  120
TAIFMGCKSG EIEVGFSNVP AEIDIEKELK SWFPEDFSRQ FSPLRLPDPN PPSSSSSLSM  180
DSPEYSSLLF NIPNTTHLPE TLREVVNPTL QQIPTLCPHQ AAMQEYARLQ NIQLPNPETE  240
AAAITRAIFN VLTSPSSSSS SQQPHTNLPY SHQVVSKFSA FKRYALPLGP RTTQVRANLG  300
RQSMMKRSFA FFRSLNYSRF SARIQANRPT TTQLHHMISE RKRREKLNES FQALRSLLPP  360
GTKKDKASLL ATTREYLSSL KAQVEELNRK NQLLEPHRLP AKEAKEEETS SSNERLIVRT  420
SQVSESTSSE ERIVDLQVII RGECPMVDIL IRILEFLKQV KNVSLQSMET NTRIMESSSM  480
NHIILRLRIE GPEWDESAFQ EAVRRVVADL AP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1339344ERKRRE
2340345RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023914406.10.0putative transcription factor bHLH041 isoform X1
TrEMBLA0A2N9IQL60.0A0A2N9IQL6_FAGSY; Uncharacterized protein
STRINGXP_008242363.11e-179(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41503354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.14e-67bHLH family protein