PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold03749-abinit-gene-0.0-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family bHLH
Protein Properties Length: 466aa    MW: 51578.2 Da    PI: 5.6871
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold03749-abinit-gene-0.0-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.16.5e-08374414954
                                                           HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                                                   HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                                            r+RR+ri +++  L++l+P        K++ a++L +A +Y+k L
  augustus_masked-scaffold03749-abinit-gene-0.0-mRNA-1 374 ARQRRERISERIRVLQRLVPGG-----SKMDTASMLDEAANYLKFL 414
                                                           69******************95.....5****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.332365414IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.27E-14370431IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.6E-13371420IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.2E-12373426IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.6E-5374414IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.15E-4387419No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    Send to blast
MDGLGWDGSQ DTNTPSLWSN QHHGLEESLV LSNSNSSLFN PIQVLHHAQT SHNYTNSERV  60
SDMVQPPAVL LDSMRAESNL NNLSHQQEDL MLRGETMVAT LGAGTSLTSD QLYPSSLINR  120
PYSMNPPRCV MGGFRLPLQS QVINGLQKGQ AQATTCSLES LDCLLSATNS NTDTSAEDDG  180
ISMLFSDCRN LWNFGSGSAV SSGESENNAS NNARNNDMQH CPVNEIDETM SQSSSDLYVN  240
HGEKVQECKP DSTKKSNDQT ELKAAVPNYH CFDLLQNDHS DNSEGGFKLI SENPPKSKKP  300
RSEKHPSSSN INFQQSTSSV SSSIEEPDPE AIAQMKEMIY RAAAFRPVDL GLEVMEKPKR  360
KNVRISTDPQ TVAARQRRER ISERIRVLQR LVPGGSKMDT ASMLDEAANY LKFLRSQVKA  420
LESLGHKLDT MNYCPPADFA FSFNPSFSMQ SHLPLQNPNH IHHFQS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1374379RQRRER
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023928066.10.0transcription factor bHLH87
SwissprotQ8S3D24e-94BH087_ARATH; Transcription factor bHLH87
TrEMBLA0A2N9EIK50.0A0A2N9EIK5_FAGSY; Uncharacterized protein
STRINGVIT_09s0002g02700.t011e-176(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45303257
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.12e-77bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]