PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold04101-snap-gene-0.20-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family bHLH
Protein Properties Length: 537aa    MW: 59028.8 Da    PI: 6.51
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold04101-snap-gene-0.20-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH53.73.8e-17343389455
                                                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                                        HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                                 hn  ErrRRdriN+++  L+el+P++      K +Ka++L +A+eY+ksLq
  maker-scaffold04101-snap-gene-0.20-mRNA-1 343 VHNLSERRRRDRINEKMKALQELIPHC-----NKTDKASMLDEAIEYLKSLQ 389
                                                6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.46E-21336403IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.501339388IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.81E-15342387No hitNo description
PfamPF000101.5E-14343389IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-20343397IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-18345394IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009704Biological Processde-etiolation
GO:0010161Biological Processred light signaling pathway
GO:0010244Biological Processresponse to low fluence blue light stimulus by blue low-fluence system
GO:0010600Biological Processregulation of auxin biosynthetic process
GO:0010928Biological Processregulation of auxin mediated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 537 aa     Download sequence    Send to blast
MNNNWLPAGW SFESDLPVTK QKKSLGQDND IVELLWRNGQ VVLHSQTRKP SFNHNDSRQV  60
VQKPKLGGSG SYGNSSNLIQ NDDDDDETVS WVQYPLEVDP FEKEFCYNLF SELPPSDPKE  120
IEQDKLLNKF GASDTDVDAT RVIANSHQPT SISVSNSVVP EFPGNLVHHL PRFPFPEPAA  180
QEDHDSGGSG KVLNFRGSSN GQYGGEGSGQ LMQGEVRECS VMTIGSSHCG SNQVPNDPDF  240
SNGVGTSALF AGPVKQDVHK ITPQSERRKM DTLEPTVASS SGGSGGSFGR RCTQSTGVNS  300
MKRKVRDAEE SECQSEAAEL ESVAGNKPAQ RSTSSRRSRS AEVHNLSERR RRDRINEKMK  360
ALQELIPHCN KTDKASMLDE AIEYLKSLQL QLQLMWMGSG MAPMMFPGVQ RYISLMGMGI  420
GPPPMPSIHN PMHLQRVPPV DQSMSMVPPT NHALMCQTPV FNNVNYQNQM HNPSFSEKYA  480
RYMGFHHMQT VSQPLHMLRF GSPTIQQSQT TVPPGTSSGH LNGGATINDS ATGMNDG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1347352ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00606ChIP-seqTransfer from AT2G43010Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023915539.10.0transcription factor PIF5-like
TrEMBLV4TKJ10.0V4TKJ1_9ROSI; Uncharacterized protein
STRINGXP_006485007.10.0(Citrus sinensis)
STRINGXP_006437070.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF81462944
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43010.27e-65phytochrome interacting factor 4