PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID snap_masked-scaffold02766-abinit-gene-0.16-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family bHLH
Protein Properties Length: 337aa    MW: 38050.6 Da    PI: 6.1925
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
snap_masked-scaffold02766-abinit-gene-0.16-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.41.1e-12182228455
                                                        HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                                                HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                                         h ++ErrRR+++ ++f  L  ++P +     kK++Ka++L +A++Y+k+Lq
  snap_masked-scaffold02766-abinit-gene-0.16-mRNA-1 182 DHIIAERRRREKLSERFIALSAIVPGL-----KKMDKASVLGEAINYVKELQ 228
                                                        699************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.145178227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.5E-17182239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.41E-17182240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.6E-10182228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.42E-12183232No hitNo description
SMARTSM003535.6E-14184233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MEISSAKWLS ELGMDEYNYI HQSHMNTLDG FTTHEMATAM VENFQQSLSS ESYSSYPTFT  60
KKATTTFSNT SAETSQRPAK QPKTNSWDSY ITDHVSPKPS SSSHILSFEN SISMLTNPQE  120
FYGSHDSSLK LNNEMVSQAN IHFPPLISKD SFENQDYARK ASLQGIKRTY SSMTRNPSNA  180
QDHIIAERRR REKLSERFIA LSAIVPGLKK MDKASVLGEA INYVKELQER IKLFEEQTKK  240
RTVESVVFVK KSQLSADDDT SSCNENSDNH SDEALLEIEA RISEKDVLIR IHCEKQKGAI  300
VKILSEIEKL NLTVVNSSVL PFGNSTIDIT IIAQEFI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1186191ERRRRE
2187192RRRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023893406.10.0transcription factor bHLH25-like
TrEMBLA0A2N9J9C00.0A0A2N9J9C0_FAGSY; Uncharacterized protein
STRINGEOX918221e-141(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45534164
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.13e-66bHLH family protein