PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

maker-scaffold12866-augustus-gene-0.2-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

bHLH

Protein Properties

Length: 485aa MW: 51708 Da PI: 6.6959

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
maker-scaffold12866-augustus-gene-0.2-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.8	6.9e-12	268	313	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+a K +Ka++L + ++Y+k Lq maker-scaffold12866-augustus-gene-0.2-mRNA-1 268 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 313 99*********************8.....6****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	6.02E-17	261	323	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.78E-13	261	317	No hit	No description
PROSITE profile	PS50888	17.39	263	312	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.1E-16	265	322	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.4E-9	268	313	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.5E-13	269	318	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048767	Biological Process	root hair elongation
GO:0005634	Cellular Component	nucleus
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 485 aa Download sequence Send to blast
MQGMNSLLNP TQISLQDLQN HHHQQQQQQQ HQQQPQQIQN SQIQHLHNSH FDPNNTHDDF 60 LEQMFSAIPS CSWPDLNPKT PWDLKPRDLS DETPPSNPDN NVPYQFDHDS STLASKLRNH 120 QISGATKSSA AAAAAALMLQ QQLFMSRGAG ESGLIQMPLS LGASDDVVDG SSSFKSPNTG 180 VFVLIYKGGE GSVQALYNGF TGSLHGPGQT PNQAQHFHHP QGGQVQGQNY GAPSGVMNQG 240 PASGSAGSAP AQPRQRVRAR RGQATDPHSI AERLRRERIA ERMKALQELV PNANKTDKAS 300 MLDEIIDYVK FLQLQVKVLS MSRLGGAAAV APLVADMSSE GGGDCIQAGT NSGALGRNSN 360 GNQTASSNDS LTVTEHQVAK LMEEDMGSAM QYLQGKGLCL MPISLATAIS TATCHSRNAM 420 INNHNSNSSN NNNNNVNNNS NNPLLQSNGE GPSSPSMSVL TVQSATMGNG GGDASVKDNT 480 SVSKP

Sequence ? help Back to Top

Protein Sequence Length: 485 aa Download sequence Send to blast

MQGMNSLLNP TQISLQDLQN HHHQQQQQQQ HQQQPQQIQN SQIQHLHNSH FDPNNTHDDF  60
LEQMFSAIPS CSWPDLNPKT PWDLKPRDLS DETPPSNPDN NVPYQFDHDS STLASKLRNH  120
QISGATKSSA AAAAAALMLQ QQLFMSRGAG ESGLIQMPLS LGASDDVVDG SSSFKSPNTG  180
VFVLIYKGGE GSVQALYNGF TGSLHGPGQT PNQAQHFHHP QGGQVQGQNY GAPSGVMNQG  240
PASGSAGSAP AQPRQRVRAR RGQATDPHSI AERLRRERIA ERMKALQELV PNANKTDKAS  300
MLDEIIDYVK FLQLQVKVLS MSRLGGAAAV APLVADMSSE GGGDCIQAGT NSGALGRNSN  360
GNQTASSNDS LTVTEHQVAK LMEEDMGSAM QYLQGKGLCL MPISLATAIS TATCHSRNAM  420
INNHNSNSSN NNNNNVNNNS NNPLLQSNGE GPSSPSMSVL TVQSATMGNG GGDASVKDNT  480
SVSKP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	272	277	RLRRER

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00659	PBM	Transfer from Pp3c14_15890	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023874690.1	0.0	transcription factor bHLH66-like
Swissprot	Q9ZUG9	3e-88	BH066_ARATH; Transcription factor bHLH66
TrEMBL	A0A2N9G1V1	0.0	A0A2N9G1V1_FAGSY; Uncharacterized protein
STRING	VIT_11s0037g00040.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4778	33	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24260.1	2e-59	LJRHL1-like 1

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhang J, et al. Sperm cells are passive cargo of the pollen tube in plant fertilization. Nat Plants, 2017. 3: p. 17079 [PMID:28585562]