PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | maker-scaffold03443-augustus-gene-0.17-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | bHLH | ||||||||
Protein Properties | Length: 249aa MW: 27121.8 Da PI: 6.0523 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 20.8 | 6.9e-07 | 155 | 181 | 4 | 30 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC CS HLH 4 ahnerErrRRdriNsafeeLrellPka 30 +h+ +Er RR++i +++ L++l+P + maker-scaffold03443-augustus-gene-0.17-mRNA-1 155 SHSLAERARREKISERMKILQDLVPGC 181 8************************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 3.14E-8 | 149 | 188 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.35E-5 | 149 | 190 | No hit | No description |
PROSITE profile | PS50888 | 9.788 | 151 | 212 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.6E-8 | 154 | 188 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.9E-4 | 155 | 182 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MDPPAMMNEG SPYNLSEIWQ FPSMNGGGEL VMGLRRPQFG DVNGATNREV SGNDPMSLDQ 60 RGVHGGGGNG GGSRKRRDLE DDTSNSKGVD SGNGANDCEG KRLKTSGSGD ENLDSKAEAE 120 PSSGKHVEQN TQTPPEPPKQ DYIHVRARRG QATDSHSLAE RARREKISER MKILQDLVPG 180 CNKFLSMKLE AVNTRMTPGL EVFPSKDFGQ QTFDTSGMAF GSQTPREYTR SSSPEWLHMQ 240 VGGGFERTT |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that forms a ternary complex with RSS3 and TIFY11A/JAZ9 to negatively regulate jasmonate-responsive genes. {ECO:0000269|PubMed:23715469}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023895615.1 | 1e-146 | transcription factor BHLH089-like isoform X1 | ||||
Refseq | XP_023895616.1 | 1e-146 | transcription factor BHLH089-like isoform X1 | ||||
Refseq | XP_023895617.1 | 1e-146 | transcription factor BHLH089-like isoform X1 | ||||
Swissprot | Q69WS3 | 8e-60 | BH094_ORYSJ; Transcription factor BHLH094 | ||||
TrEMBL | A0A2N9EC22 | 1e-133 | A0A2N9EC22_FAGSY; Uncharacterized protein | ||||
STRING | EMJ24543 | 1e-107 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1171 | 34 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G59640.1 | 2e-78 | BIG PETAL P |