PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold16924-snap-gene-0.3-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family bHLH
Protein Properties Length: 496aa    MW: 56678.5 Da    PI: 8.8552
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold16924-snap-gene-0.3-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.25.3e-12335379554
                                               HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                                       HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                               h + Er+RR+++N++f+ Lr+llP+      +K +Ka+ L  + eY++sL
  maker-scaffold16924-snap-gene-0.3-mRNA-1 335 HMISERKRREKLNESFQALRSLLPPG-----TKKDKASLLATTREYLSSL 379
                                               8899********************97.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.983330379IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.89E-16331396IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.05E-11332384No hitNo description
Gene3DG3DSA:4.10.280.101.3E-14334394IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-9335379IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-13336385IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 496 aa     Download sequence    Send to blast
MDTAFLFDES SRANFFQLIM QSIPYTYICL WSNWPQSSSF LRYLDGFFYE ENNQPSSSSG  60
TQARRLFEEY RQSVFMVENE CVPGLAFKNS RPYLELQEVH LQRFASKEVQ RQFYQVAGIK  120
TAIFMGCKSG EIEVGFSNVP AEIDIEKELK SWFPEDFSRQ FSPLRLPDPT PSSSSSLSMD  180
SPEYSSLLFN IPNTTHLPET LREVVNPTLQ QIPTLSPHQA AMQAYARLQN IQLPNPETEA  240
AAITRAIFNV LTSPSSSSSS QQPHTNLPYS HQVVSKFSAF KRYALPLGPR TTQVRANLGR  300
QSMMKRSFAF FRSLNYSRFS ARIQANCPTT TQLHHMISER KRREKLNESF QALRSLLPPG  360
TKKDKASLLA TTREYLSSLK AQVEELNRKN QLLEPHRLPA KEAKEEETSS SNERLIVRTS  420
HVSESTSSEE RIVDLQVIIR GECPMVDILI RILELLKQVK NVSLQSMETN TRIIESSSMN  480
HIILRLRIEG TLLLVL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1338343ERKRRE
2339344RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023914406.10.0putative transcription factor bHLH041 isoform X1
TrEMBLA0A2N9IQL60.0A0A2N9IQL6_FAGSY; Uncharacterized protein
STRINGXP_008344123.11e-164(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41503354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.16e-54bHLH family protein