PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

augustus_masked-scaffold00098-abinit-gene-0.10-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

bHLH

Protein Properties

Length: 411aa MW: 45178.2 Da PI: 7.9741

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
augustus_masked-scaffold00098-abinit-gene-0.10-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	12.7	0.00024	299	336	12	54
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ ++++ L++l+ + +K + a++L +A+ YIk L augustus_masked-scaffold00098-abinit-gene-0.10-mRNA-1 299 RKEKLGDRIAALQQLVAPF-----GKTDTASVLMEAIGYIKFL 336 7788899*******998.....8**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.458	287	336	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.48E-4	297	341	No hit	No description
SuperFamily	SSF47459	3.53E-10	297	349	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.3E-8	301	344	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 411 aa Download sequence Send to blast
MESANLHHQH QLPDQLVGSS SLANPTYYGV GSNHAAWTPN VTLNNNFNSN FDGVFSNPRE 60 SKQDNDILAP CLNNSMVQDL GFYWLSNAGS SNSQSAHDLK IKEEHSESIR KYTELLHSSS 120 EDYHFTPTSH IKNERNDLSE KLLPKIISTR GFYSNAQNCP SFGGVAMPSR GNFSQIYPSI 180 NISNLNQSPS SSEISSSSLD MNLQALNLLT PERYSGSFTQ PSHDSLGLFK ASPSFGLDHM 240 HMQQLTHRPS FSPNNISPFT NRITEEKRSS SLMEAKTAQA ASKKSRLESR ASCPPFKVRK 300 EKLGDRIAAL QQLVAPFGKT DTASVLMEAI GYIKFLHNQI ETLSVPYMKS SRNKACRTMQ 360 AGSVDDGNEE QKRDLRSRGL SLVPLSCMSY VTGDSGGGGI WPQPNYGGGG T

Sequence ? help Back to Top

Protein Sequence Length: 411 aa Download sequence Send to blast

MESANLHHQH QLPDQLVGSS SLANPTYYGV GSNHAAWTPN VTLNNNFNSN FDGVFSNPRE  60
SKQDNDILAP CLNNSMVQDL GFYWLSNAGS SNSQSAHDLK IKEEHSESIR KYTELLHSSS  120
EDYHFTPTSH IKNERNDLSE KLLPKIISTR GFYSNAQNCP SFGGVAMPSR GNFSQIYPSI  180
NISNLNQSPS SSEISSSSLD MNLQALNLLT PERYSGSFTQ PSHDSLGLFK ASPSFGLDHM  240
HMQQLTHRPS FSPNNISPFT NRITEEKRSS SLMEAKTAQA ASKKSRLESR ASCPPFKVRK  300
EKLGDRIAAL QQLVAPFGKT DTASVLMEAI GYIKFLHNQI ETLSVPYMKS SRNKACRTMQ  360
AGSVDDGNEE QKRDLRSRGL SLVPLSCMSY VTGDSGGGGI WPQPNYGGGG T

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023899206.1	0.0	transcription factor bHLH110 isoform X1
TrEMBL	A0A2N9ICA9	0.0	A0A2N9ICA9_FAGSY; Uncharacterized protein
STRING	VIT_18s0001g12970.t01	1e-178	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4045	32	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27660.1	1e-72	bHLH family protein