PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold01436-augustus-gene-0.28-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family bHLH
Protein Properties Length: 744aa    MW: 79798.8 Da    PI: 6.4637
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold01436-augustus-gene-0.28-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.63.4e-16478524455
                                                    HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                                            HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                                     hn  ErrRRdriN+++  L+el+P++      K++Ka++L +A+eY+k Lq
  maker-scaffold01436-augustus-gene-0.28-mRNA-1 478 VHNLSERRRRDRINEKMRALQELIPNC-----NKVDKASMLDEAIEYLKTLQ 524
                                                    6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.68E-17470528No hitNo description
SuperFamilySSF474591.44E-20471536IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.7E-20471532IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.349474523IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-13478524IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-17480529IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009704Biological Processde-etiolation
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0031539Biological Processpositive regulation of anthocyanin metabolic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 744 aa     Download sequence    Send to blast
MPLSELYRMA KGKLESTREK NTACSNDLSF LPENDLFELV WENGQILKQG QSSRARKSPT  60
RNSFQSHCLP SYTSKIRDKD IGNGSNSKMG KFGGMESVLN EIPMSVPSDE IDLSQDDDIM  120
PWLNYPIDDS LQHEYCSELL PELSGVTVNE LSNQNNLASI DKRSSCNLVY RDCHTNSVND  180
VVSLGQGNVS KVSSVVIGEA TRPRTTPLYP SSSQQCQTSF SSLRSRITDG AGNNTSSVMH  240
RAVCGDSTQV ASAAGVFPTI KMQKKDQMSS NNNSNLMNFS HFSRPAALVK ANLQNMGLMV  300
GSDLSSMERI TSKDKGSAAS IKHPPESTHI NSISGLQKES SSHCQPLAAP APSKVDLKPS  360
EDKPVEETVA SKQSEAVCPD EASRNDKISN QVFSESVTKG LPDAEKTTEP VVASSSACSG  420
NSVERASDDP THNLKRKFRD TEESEYHSED IEEESIGAKK AAPGRAGTGS KRSRAAEVHN  480
LSERRRRDRI NEKMRALQEL IPNCNKVDKA SMLDEAIEYL KTLQLQVQIM SMGAGFYMPP  540
MMLPTGMQHM SAPHMAHFSP MGVGMGMGMG MGYGMGMPDM NVGPSGYPMI QVPPMQGAHF  600
PGPPISGHTA MHGMAGSNLQ MFGLPGQGLP MPMPMPRAPL IPLSGGPIMK SATGLNACGV  660
VGPVENVDSA PASSSKDPMQ NVNSQAMQIT GASISMTQTS SQCPATNARF EPSSLVQNNG  720
QVSDVGNTAV NSANGNDLVP SKPA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1482487ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00081ChIP-seqTransfer from AT1G09530Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023888905.10.0transcription factor PIF3-like isoform X2
TrEMBLA0A2I4HK490.0A0A2I4HK49_JUGRE; transcription factor PIF3-like isoform X1
STRINGEMJ084100.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF52713353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.29e-50phytochrome interacting factor 3