PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold10205-augustus-gene-0.7-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family bHLH
Protein Properties Length: 334aa    MW: 36318.3 Da    PI: 8.5203
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold10205-augustus-gene-0.7-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.92e-14176221555
                                                   HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                                           HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                                   hn+ ErrRRdriN+++ +L++++P+a      K + a++L +++eY+k+Lq
  maker-scaffold10205-augustus-gene-0.7-mRNA-1 176 HNQSERRRRDRINQKMKTLQRMVPNA-----NKTDIASMLDEVIEYLKQLQ 221
                                                   9************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.571171220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.45E-18174248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.8E-17176230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.5E-12176221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.27E-14176225No hitNo description
SMARTSM003532.8E-15177226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009704Biological Processde-etiolation
GO:0016607Cellular Componentnuclear speck
GO:0003690Molecular Functiondouble-stranded DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MHGLRGLIPT TPTKPTYGRA GDTLESIVHQ ATCHKQISNV LQHDHAPAAN VVPIDAVSTG  60
GTWAETESTG QVQVAPTTLM RKRTRSESEQ CHGRKICGSL NEDSADHGAS ATFCRDNDTT  120
IMTWASFDSP RSLKTRTTEV DSSCLDGLGN RDEEHETNNE MGRSHSTRKT RAAAIHNQSE  180
RRRRDRINQK MKTLQRMVPN ANKTDIASML DEVIEYLKQL QAQVHQLMSM RSMPQMMMPL  240
GMQQHLQMSL LARMGMGMGV GLGMGMGMLD MSTMSHRAPQ TLASLINPAS VSASAPTLVS  300
PPFVLTSMIP TDASAQSKPN SGTNAAVPLL AQVS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1179184ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00571DAPTransfer from AT5G61270Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023910862.10.0transcription factor PIF7-like
TrEMBLA0A2N9IHV61e-155A0A2N9IHV6_FAGSY; Uncharacterized protein
STRINGXP_002514702.11e-126(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF129992432
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.19e-30bHLH family protein