PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold00442-snap-gene-1.11-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family bHLH
Protein Properties Length: 255aa    MW: 29128.1 Da    PI: 8.6511
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold00442-snap-gene-1.11-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.61.2e-1469121155
                                                CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                                        HLH   1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                                                ++ +hn+ Er RR+++N+ ++ Lr+llP      + kKls   ++  +v+YI +Lq
  maker-scaffold00442-snap-gene-1.11-mRNA-1  69 KKLNHNASERDRRKKVNDLYSSLRSLLPGtY---RTKKLSIPKTVSSVVKYIPELQ 121
                                                6789*************************66...8888***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000836.09E-1366125No hitNo description
PROSITE profilePS5088814.45668120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.66E-1569140IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-1269141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.7E-1269121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-974126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MLALSPSLVS TTRWYLENNH TNYDQNFNHV GDSETIESVL HFSTSQQAQF ELDLITPPIT  60
SSGDPKIYKK LNHNASERDR RKKVNDLYSS LRSLLPGTYR TKKLSIPKTV SSVVKYIPEL  120
QKEVKGLIHK KEELLSRISR LGNETLEEEK PKIIAQSTSI SIWASRVDNR QIVVQISIDG  180
KVHKTPLSEI LCNLEEDGLM VLNASSFESF GGRIFCNLHL QVSSFYFFNS QSHPFKQWLR  240
EGSPDFLHSI THIIL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023927154.11e-150transcription factor ORG2-like isoform X1
TrEMBLA0A438HXF15e-73A0A438HXF1_VITVI; Transcription factor ORG2
STRINGVIT_13s0047g00450.t011e-73(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24023379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56970.12e-48bHLH family protein